Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C15
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    26   5.2  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   9.0  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.0  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   9.0  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    25   9.0  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    25   9.0  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 356 TQKLGLFPELRI*GLSCPXXSASXGP 279
           T++ GLFP+L+    +C    A+ GP
Sbjct: 318 TRRTGLFPQLKYIRFTCTKCGATLGP 343


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 53  KTMYALYQTNPEVF 94
           +T+Y  YQ NPEVF
Sbjct: 459 QTLYDFYQQNPEVF 472


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 580 FSMNI*ILLRPYVFFPIQS*ILGCFIP 500
           F+  I  ++RP + FP+    LG FIP
Sbjct: 264 FTTKILRIVRPILLFPLAGKFLGRFIP 290


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 151  IPKVIRGESVSLIMXCIGTKYFRIGLI 71
            IP +++    SLI    GT YF +GLI
Sbjct: 1123 IPLIVKYAENSLIPTVRGTAYFVLGLI 1149


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 210 CKLHFEFW*MTFSGSGALGFIPIGPLTRAXXRTREPLNSQFRKK 341
           C+  FE+  + +  S +L F+   P T       +PL S FRKK
Sbjct: 299 CERIFEY--VFYLSSWSLVFLLTLPATTINRENFQPLKSSFRKK 340


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 269 YTHWAPXSRXXKDKRALKFSIPEKDLISGFLDK 367
           Y HW   ++   D   ++  I    +I G+L+K
Sbjct: 101 YCHWGATTQDVTDSATVRQMIDSFKIIKGYLEK 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,068
Number of Sequences: 5004
Number of extensions: 59825
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)