Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C15
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 458 YKEDSWEKRELMLIGNKTTKYLTLDGEENIW 550
           Y   SW  R L   G K T  L++     IW
Sbjct: 56  YFRQSWVDRRLAFQGGKETLALSISMLARIW 86


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 524 LNTWLFYSQSTSIPFFPNCLLYNQ 453
           L TW F    +SIP     L++NQ
Sbjct: 165 LRTWFFLDLISSIPLDYIFLIFNQ 188


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 524 LNTWLFYSQSTSIPFFPNCLLYNQ 453
           L TW F    +SIP     L++NQ
Sbjct: 165 LRTWFFLDLISSIPLDYIFLIFNQ 188


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 524 LNTWLFYSQSTSIPFFPNCLLYNQ 453
           L TW F    +SIP     L++NQ
Sbjct: 165 LRTWFFLDLISSIPLDYIFLIFNQ 188


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 497  STSIPFFPNCLLYNQGIFSLS 435
            S  +P      LY+QG+FSLS
Sbjct: 1340 SMEVPSDALIALYSQGLFSLS 1360



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 325 LNSGKRPNFWVFRQKIPGEPAKKLIPNCKG 414
           ++S +  +FW  +  +   P   L+PN  G
Sbjct: 378 ISSSEENDFWQPKPTLEDAPQNSLLPNFVG 407


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 364 QKIPGEPAKKLIPN 405
           +KIPG PA  LI N
Sbjct: 42  EKIPGPPALPLIGN 55


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 295 ARVRGPMGIKPSAPEPLNVIYQN 227
           A    P+G   +A +P +V+Y N
Sbjct: 90  ANANSPVGSPSAALQPQHVVYGN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,139
Number of Sequences: 438
Number of extensions: 4424
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)