Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C14
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88184-1|AAK31517.1|  476|Caenorhabditis elegans C-type lectin p...    31   0.66 
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    29   3.5  
Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    27   8.1  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    27   8.1  

>U88184-1|AAK31517.1|  476|Caenorhabditis elegans C-type lectin
           protein 19 protein.
          Length = 476

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 480 VTITPWTE-S*TSSRVLTPRSISTPASRSSDT 572
           VT+ PW   +  SS +LTP S+S+P S++  T
Sbjct: 376 VTVAPWISYTCNSSLILTPASVSSPRSQAGGT 407


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 161  IGSLDLTNRQKLGAATAGVALDNVNGHGVSLTDTHIPGFGD 283
            IG +DL+    LG A     LDNV+ HG+ L     P  GD
Sbjct: 1832 IGKVDLSQNSSLGMAKL---LDNVSVHGILLDSIMDPTVGD 1869


>AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical
           protein F22F7.1b protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 113 GVKVPFAGNDKNIVSAIGSLDLTNRQ 190
           GV VPF G DK+I++     D T+RQ
Sbjct: 237 GVAVPFPGADKSIINRSQYYDATSRQ 262


>AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical
           protein F22F7.1a protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 113 GVKVPFAGNDKNIVSAIGSLDLTNRQ 190
           GV VPF G DK+I++     D T+RQ
Sbjct: 237 GVAVPFPGADKSIINRSQYYDATSRQ 262


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +3

Query: 342 RRLSPPEICQISLMYPTSTLSVAE*TICSKIRLVHQRPPLTRTSSIVTITPWTES*TSSR 521
           R +  P+   +    PT+T+     T  +K +   +    T T S  TIT  T   T+S 
Sbjct: 545 REVVAPKATVLKTTVPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTITTSTPPSTTS- 603

Query: 522 VLTPRSISTPASRSSDTP 575
              P +  TP + SS TP
Sbjct: 604 ---PTTTVTPVATSSATP 618


>Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical
           protein ZK262.11 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 396 LKLGTLAISGIFLVA-KAFAVMSWXSLWKRFTLP 298
           L+  TL I+GIF    +     SW  LWK+F  P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


>Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical
           protein C43D7.6 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 396 LKLGTLAISGIFLVA-KAFAVMSWXSLWKRFTLP 298
           L+  TL I+GIF    +     SW  LWK+F  P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 483 TITPWTES*TSSRVLTPRSISTPASRSSDTP 575
           T++  + S TSS+  +P ++ TP +  S TP
Sbjct: 565 TVSSSSSSSTSSKYFSPDAVETPTNSGSSTP 595


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 483 TITPWTES*TSSRVLTPRSISTPASRSSDTP 575
           T++  + S TSS+  +P ++ TP +  S TP
Sbjct: 467 TVSSSSSSSTSSKYFSPDAVETPTNSGSSTP 497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,689
Number of Sequences: 27780
Number of extensions: 310324
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)