Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C11
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   2.1  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   2.1  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    25   3.8  
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    25   3.8  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    25   3.8  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    24   5.0  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    24   6.6  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    24   6.6  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    24   6.6  

>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 60  CTIYLKNFNNATYVVFVRQN 119
           CT  L+NF ++TYVV    N
Sbjct: 29  CTEILENFKSSTYVVITDSN 48


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 FLLCPIDFVSVVLRFLNYSTDFHFVVLFFLIYPIYSVFVVP 317
           FLL     +S  L  +++   FHF+   FL +P+ S  + P
Sbjct: 158 FLLYHQIILSHSLFHISHLISFHFLFFSFLSFPLLSFILFP 198


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -1

Query: 318 LGQQTQNKW--DKLEKIGQQSENQWSN--LETLGQQTQN 214
           +G+ T N+   +K+E I ++S  QW N  LE L  Q Q+
Sbjct: 34  VGKFTSNEKYNEKIEDINERSNPQWDNAGLENLLNQLQD 72


>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +3

Query: 51  TIKCTIYLKNFNNATYVVFVRQNYSIGSGLVGLNLLIDPIYFEFVALHFLLCPIDFVSVV 230
           +++  +Y K   N         +Y   + L+  N   + +     +  F   P +   + 
Sbjct: 21  SLQAEVYGKVLTNTILPKINLLSYDTRARLISSNKTFETVVERDGSFTFPNVPDEIYFLR 80

Query: 231 LRFLNYS-TDFHFVVLFFLIYPIYS 302
           L  ++Y  ++FH ++   ++YP Y+
Sbjct: 81  LESIDYEFSEFHIIINESIVYPYYT 105


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 131 TNGIVLANKHDVSGVIEVFQVYSTFN 54
           T+ +VLANK DVSG +   ++    N
Sbjct: 118 TSILVLANKSDVSGALSSEEISKILN 143


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 174 FEFVALHFL-LCPIDFVSVVLRFLNYSTDFHFVVLFFLIYPIYSVFVVPN 320
           F  V+  FL +  I F S ++  L+ S    F+   F IY ++ VFVVP+
Sbjct: 558 FYRVSKRFLDILLIWFESYLVEELDNSKSIFFL---FKIYKVFEVFVVPH 604


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +3

Query: 69  YLKNFNNATY--VVFVRQNYSIGSGLVGLNLLIDPIYFEFVALH 194
           Y  + NN  +  V+    NY+  +  V   L +DP Y +F   H
Sbjct: 833 YSDDTNNGVFDLVLTTHTNYTDMARAVANKLNVDPNYLQFTMAH 876


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 312 QQTQNKWDKLEKIGQQSENQWSNLETLGQQTQNQ 211
           Q  +N++DK+EKI    E+    LE LG    N+
Sbjct: 117 QSLENEFDKVEKIIVNEEDMKKTLE-LGLPASNR 149


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 221 VCCPKVSKLLH*FSLCCPIFSNLSHLFC 304
           VCC   SKLL   SL   I    S  FC
Sbjct: 916 VCCDLTSKLLIVVSLSNTITPEFSQQFC 943


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,376
Number of Sequences: 5004
Number of extensions: 16569
Number of successful extensions: 41
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)