Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C11
         (321 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035621-1|AAH35621.1|  893|Homo sapiens chromosome 12 open read...    38   0.009
AK097517-1|BAC05084.1|  621|Homo sapiens protein ( Homo sapiens ...    31   0.58 
BC127816-1|AAI27817.1|  416|Homo sapiens Unknown (protein for IM...    29   4.1  
BC024317-1|AAH24317.1| 1620|Homo sapiens CNOT1 protein protein.        29   4.1  
BC000779-1|AAH00779.2|  539|Homo sapiens CNOT1 protein protein.        29   4.1  
AL117492-1|CAB55960.1| 1100|Homo sapiens hypothetical protein pr...    29   4.1  
AB023224-1|BAA76851.2| 1835|Homo sapiens KIAA1007 protein protein.     29   4.1  

>BC035621-1|AAH35621.1|  893|Homo sapiens chromosome 12 open reading
           frame 25 protein.
          Length = 893

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -1

Query: 321 DLGQQTQNKWDKLEKIGQQSENQWSNLETLGQQTQNQWDKVE 196
           ++ QQ Q KW  LE+  Q+   QW NLE L ++ Q +W ++E
Sbjct: 498 EMWQQRQKKWALLEQEHQEKLRQW-NLEDLAREQQRRWVQLE 538



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 321 DLGQQTQNK-WDKLEKIGQQSENQWSNLETLGQQTQNQWDKVENAGQQ 181
           + G++ + + W + E++ QQ + +W+ LE   Q+   QW+  + A +Q
Sbjct: 483 EFGREMRRQLWLEEEEMWQQRQKKWALLEQEHQEKLRQWNLEDLAREQ 530


>AK097517-1|BAC05084.1|  621|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40198 fis, clone TESTI2019975, weakly similar to
           TRICHOHYALIN. ).
          Length = 621

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 312 QQTQNKWDKLEKIGQQSENQWSNLETLGQQTQNQWDKVE 196
           +Q +  W+K EK+ +Q E  W   E + +  +  W+K E
Sbjct: 333 RQEEMMWEKEEKMRRQEEMMWEKEEKMRRLEEMMWEKEE 371



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 312 QQTQNKWDKLEKIGQQSENQWSNLETLGQQTQNQWDKVENAGQQ 181
           +Q +  W++ EK+ +Q E      E + +Q +  W++     QQ
Sbjct: 563 EQEEKMWEQEEKMCEQEEKMQEQEEKMRRQEEKMWEQEVRLRQQ 606


>BC127816-1|AAI27817.1|  416|Homo sapiens Unknown (protein for
           IMAGE:40131779) protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 312 QQTQNKWDKLEKIGQQSENQWSNLETLGQQTQNQWDKVENAGQQ 181
           +Q +  W++ EK+ +Q E      E + +Q +  W++     QQ
Sbjct: 358 EQEEKMWEQEEKMCEQEEKMQEQEEKMRRQEEKMWEQEVRLRQQ 401


>BC024317-1|AAH24317.1| 1620|Homo sapiens CNOT1 protein protein.
          Length = 1620

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 188  PAFSTLSH*FCVCCPKVSKLLH*FSLCC 271
            PAF   +H F  C P++ KL    + CC
Sbjct: 1577 PAFKFWNHEFVHCAPEIEKLFQSVAQCC 1604


>BC000779-1|AAH00779.2|  539|Homo sapiens CNOT1 protein protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 188 PAFSTLSH*FCVCCPKVSKLLH*FSLCC 271
           PAF   +H F  C P++ KL    + CC
Sbjct: 496 PAFKFWNHEFVHCAPEIEKLFQSVAQCC 523


>AL117492-1|CAB55960.1| 1100|Homo sapiens hypothetical protein
            protein.
          Length = 1100

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 188  PAFSTLSH*FCVCCPKVSKLLH*FSLCC 271
            PAF   +H F  C P++ KL    + CC
Sbjct: 1057 PAFKFWNHEFVHCAPEIEKLFQSVAQCC 1084


>AB023224-1|BAA76851.2| 1835|Homo sapiens KIAA1007 protein protein.
          Length = 1835

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 188  PAFSTLSH*FCVCCPKVSKLLH*FSLCC 271
            PAF   +H F  C P++ KL    + CC
Sbjct: 1792 PAFKFWNHEFVHCAPEIEKLFQSVAQCC 1819


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,684,612
Number of Sequences: 237096
Number of extensions: 513697
Number of successful extensions: 3319
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3318
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1569468906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)