Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_C08
(267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 28 0.25
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 1.4
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 2.4
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 2.4
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 2.4
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 24 3.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 4.1
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 24 4.1
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 23 7.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 23 7.2
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 23 7.2
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 23 7.2
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 23 9.6
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 23 9.6
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 0.25
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 24 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 200
R+ RD + N DGTSGA + F G K + + S D+++ K AA VALD
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499
Query: 201 V 203
+
Sbjct: 500 L 500
Score = 25.0 bits (52), Expect = 1.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 180 AGVALDNVNGHGVSLTDTHIPG 245
A A+DN+ G SL H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 1.4
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 208 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 62
P T S++ V++ S + T+ ++ PA + TP P PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 2.4
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 211 WPFTLSSATPAVAAPSFCLLVKSKEPI-ALTIFLSLPAKGTLTPAPEVPSELS 56
+PF S P PS+ LV P LT+ + G L+ A +PS S
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTV-----SSGPLSTASSIPSNCS 318
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 2.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 112 SLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNS 8
S+P G P VP + S +A SLRT ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 2.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 112 SLPAKGTLTPAPEVPSE 62
SLPA GT TP+P V +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 24.2 bits (50), Expect = 3.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 63 SDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQ 161
SDGTS V V GN I S+ G +D+ N Q
Sbjct: 442 SDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQ 474
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect = 4.1
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -3
Query: 136 PIALTIFLSLPAKGTLTPAPEVPSELSVRAPCASLRTL-ELVNSSG 2
PIA + +PA L PA P AP A + ++ EL G
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDG 499
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
2|||Manual
Length = 967
Score = 23.8 bits (49), Expect = 4.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 147 LTNRQKLGAATAGVALDNVNGHGVSLTDTHIPGFGDXV 260
+T+ ++ A +A N+ G + TH+PG G V
Sbjct: 922 ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSV 959
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 141 LDLTNRQKLGAATAGVALD 197
LDLTN +K+G+ A LD
Sbjct: 235 LDLTNAKKIGSYRANDGLD 253
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 23.0 bits (47), Expect = 7.2
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Frame = +3
Query: 210 HGVSL----TDTHIPGFGDXVTA 266
HG +L HIPG GD VT+
Sbjct: 279 HGTNLPKHDASVHIPGVGDFVTS 301
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 23.0 bits (47), Expect = 7.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -2
Query: 230 IRETYSVAVYIIQCHSSGCSA*FLPIS*V*GTDSAYYILVVTSKGYFN 87
+R T VAV+IIQ H+ V S ILV + K YFN
Sbjct: 589 LRNTMKVAVHIIQQHTVLIKPFRDDSKFVDENQSLNNILVASLKFYFN 636
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 23.0 bits (47), Expect = 7.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 134 DSAYYILVVTSKGYFNSSTRGTIGVERESSVRVPADS 24
+ A+Y LV T + Y S +G + + +VPA +
Sbjct: 159 EEAFYSLVRTIRRYNKSEEKGFQNKQAVQTAQVPAST 195
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 22.6 bits (46), Expect = 9.6
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -3
Query: 163 FCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSELSVRAPCASLR 29
F ++ EPI + + L L + P VPS+ ++ C R
Sbjct: 50 FIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSR 94
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 22.6 bits (46), Expect = 9.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 85 PAPEVPSELSVRAPCASLR 29
P PEVPS R+P A R
Sbjct: 176 PLPEVPSRFRSRSPPARRR 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,023,336
Number of Sequences: 5004
Number of extensions: 17174
Number of successful extensions: 51
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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