Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C08
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   4.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   6.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    19   8.0  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           19   8.0  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           19   8.0  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 51  LTLNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQKL 167
           LTL+ D      V   F  NDKN        D+T R KL
Sbjct: 106 LTLSGDFAEKIWVPDTFFANDKNSFLH----DVTERNKL 140


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 165 LGAATAGVALDNVNGHGVSLTDTHIPGFGD 254
           +G   AGV   N NG  V   D      GD
Sbjct: 369 VGRNGAGVGAMNANGEAVGEVDEDDDDDGD 398


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 58  STPMVPLVLELKYPLLVTTRI 120
           S+P    +L+ +YPL++ T++
Sbjct: 29  SSPRPKPLLKKEYPLVMDTKL 49


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 88  TPAPEVPSELSVRAPCASLRT 26
           TP  E+P+    +A CA + T
Sbjct: 71  TPLNELPANKRFQAHCAGVIT 91


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 88  TPAPEVPSELSVRAPCASLRT 26
           TP  E+P+    +A CA + T
Sbjct: 71  TPLNELPANKRFQAHCAGVIT 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,083
Number of Sequences: 438
Number of extensions: 1113
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)