Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C07
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...   227   7e-61
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...   211   5e-56
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   1.1  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    27   1.9  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    25   4.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.9  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    25   7.8  

>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score =  227 bits (555), Expect = 7e-61
 Identities = 101/158 (63%), Positives = 123/158 (77%)
 Frame = +2

Query: 2   KISATSIFFESMPYKVDPTTGLIDYDKLAETAKLFKPRVIIAGMSCYSRCLDYKRFRQIA 181
           KISA S +FESMPY+VDP TGLIDYD L   A+LF+P++++AG S Y R +DY R RQIA
Sbjct: 145 KISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLIDYARMRQIA 204

Query: 182 DENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKA 361
           D   AYL+ DMAH+SGLV+AGVIPSPFE+ D+VTTTTHK+LRGPR  +IFFR+G+R    
Sbjct: 205 DSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRRGLRKHDK 264

Query: 362 NGQKVMYDFEGKINQAVFPGLQGGPHNHAIAAIATAMK 475
            G  + YD E KIN +VFPG QGGPHNH I A+A A+K
Sbjct: 265 KGNPIYYDLEDKINFSVFPGHQGGPHNHTITALAVALK 302


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score =  211 bits (515), Expect = 5e-56
 Identities = 95/156 (60%), Positives = 119/156 (76%)
 Frame = +2

Query: 5   ISATSIFFESMPYKVDPTTGLIDYDKLAETAKLFKPRVIIAGMSCYSRCLDYKRFRQIAD 184
           ISA S +F +MPY V+  TG+IDYD L + A  F+P+VI+AG S Y+R +DYKR R+I +
Sbjct: 152 ISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAYARLVDYKRMRKITE 211

Query: 185 ENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKAN 364
              AYL+ DMAH+SGLVAAGVIPSPFE+ DIVTTTTHK+LRGPR  +IF+RKG RS    
Sbjct: 212 MCNAYLLCDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFYRKGTRSHDKR 271

Query: 365 GQKVMYDFEGKINQAVFPGLQGGPHNHAIAAIATAM 472
           G  ++Y+ E KIN +VFPG QGGPHNH I A+A A+
Sbjct: 272 GNPILYELEDKINFSVFPGHQGGPHNHTITALAVAL 307


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 29   ESMPYKVDPTTGLIDYDKLAETAKLFKPRVIIAGMSCYSRCL 154
            E++P  ++P + L +   +    +   P +IIA   CYS CL
Sbjct: 934  EALPLVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYSTCL 975


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = +2

Query: 248 IPSPFE-HCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVMYDFEGKINQAVFPGL 424
           IP PF  H   +   TH TL  P   +IF   G       G++  YD    I   V   +
Sbjct: 102 IPMPFYLHAKCLKNNTHITLCSPERKIIFRASGGTCGFRKGKRRGYDAAYTICSKVLEQI 161

Query: 425 Q 427
           Q
Sbjct: 162 Q 162


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 260 FEHCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVMYDFEGKIN 403
           F H DIV  TT+  L   R      R+ V  + A+  K+ Y F G  N
Sbjct: 119 FAHFDIVPYTTYSILTKYRCAQDKEREIVGLINASQSKLRYKFCGLRN 166


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 286  NYTQNTAGSSRWGHILPQGSSLGQS 360
            NY ++TA +S  GH+L  G   GQ+
Sbjct: 2611 NYARSTAVASVLGHVLGLGDRHGQN 2635


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 140 YSRCLDYKRFRQIADENGAY 199
           YS  + Y  FR+++DEN AY
Sbjct: 196 YSCDIPYDPFRKLSDENKAY 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,102
Number of Sequences: 5004
Number of extensions: 38763
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)