Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C07
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effec...   252   1e-67
U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effec...   252   1e-67
Z69634-6|CAD01081.2|  490|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U43375-4|AAA83621.1|  205|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform a protein.
          Length = 484

 Score =  252 bits (616), Expect = 1e-67
 Identities = 113/158 (71%), Positives = 135/158 (85%)
 Frame = +2

Query: 2   KISATSIFFESMPYKVDPTTGLIDYDKLAETAKLFKPRVIIAGMSCYSRCLDYKRFRQIA 181
           K+SATS FF+S+PYKVDPTTGLIDYDKL + A LF+P+ IIAG+SCY+R LDY+RFR+IA
Sbjct: 162 KVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDYERFRKIA 221

Query: 182 DENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKA 361
            + GAYLM+DMAH+SGLVAAG+IPSPFE+ D+VTTTTHK+LRGPR  +IF+RKGVRS  A
Sbjct: 222 TKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIFYRKGVRSTNA 281

Query: 362 NGQKVMYDFEGKINQAVFPGLQGGPHNHAIAAIATAMK 475
            G   +YD E KIN AVFPGLQGGPHNH IA IA A++
Sbjct: 282 KGVDTLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALR 319


>U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform b protein.
          Length = 507

 Score =  252 bits (616), Expect = 1e-67
 Identities = 113/158 (71%), Positives = 135/158 (85%)
 Frame = +2

Query: 2   KISATSIFFESMPYKVDPTTGLIDYDKLAETAKLFKPRVIIAGMSCYSRCLDYKRFRQIA 181
           K+SATS FF+S+PYKVDPTTGLIDYDKL + A LF+P+ IIAG+SCY+R LDY+RFR+IA
Sbjct: 185 KVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDYERFRKIA 244

Query: 182 DENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKA 361
            + GAYLM+DMAH+SGLVAAG+IPSPFE+ D+VTTTTHK+LRGPR  +IF+RKGVRS  A
Sbjct: 245 TKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIFYRKGVRSTNA 304

Query: 362 NGQKVMYDFEGKINQAVFPGLQGGPHNHAIAAIATAMK 475
            G   +YD E KIN AVFPGLQGGPHNH IA IA A++
Sbjct: 305 KGVDTLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALR 342


>Z69634-6|CAD01081.2|  490|Caenorhabditis elegans Hypothetical
           protein B0001.8 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 283 NNY----TQNTAGSSRWGHILPQGSSLGQSERAESDVRFRREDQPGRIPGASGRSSQPRH 450
           NNY    + N   SSR  H  P+GS  G  +R+ S  R ++ DQ         R+  PR 
Sbjct: 156 NNYDGPQSSNDYRSSR--HQSPEGSRYGHRQRSISPFRNQQFDQRNSRRDNYPRNQSPRG 213

Query: 451 SRDS 462
           SR S
Sbjct: 214 SRHS 217


>U43375-4|AAA83621.1|  205|Caenorhabditis elegans Hypothetical
           protein K09C4.6 protein.
          Length = 205

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 421 PREYGLVDLPFEIVHHFLPVRFDRANSLAEEYD 323
           PR+ GL+ +P EI+ + LP +   A S+AE+ D
Sbjct: 171 PRDSGLIPIPSEILGNSLPSQ--TALSMAEKID 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,570
Number of Sequences: 27780
Number of extensions: 230220
Number of successful extensions: 607
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)