Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C06
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    24   5.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   6.8  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    23   9.0  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    23   9.0  

>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 18  NCVFVHRFYGCGSRS*SQSKDYRWS 92
           N V +   Y C  ++  QS D+RW+
Sbjct: 244 NMVAISSSYACTVKNKEQSLDFRWT 268


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 81   YRWSPNDDSNVPECRCVAI 137
            Y  SP+D+  + E RC+A+
Sbjct: 2154 YGKSPSDNPQIKEIRCIAL 2172


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 189 EICTHSRPLSFRRCCSTMAHSVGF 260
           EI THS+PL      S+ +H++ F
Sbjct: 73  EIFTHSQPLPIPAGPSSKSHAIDF 96


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 284 IPPLLAAVEPNRMRHRAAASPKGQWAAVS 198
           IP LLA VEP+   H     P  + +A S
Sbjct: 231 IPKLLANVEPSANAHGLGIEPASKASASS 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,747
Number of Sequences: 5004
Number of extensions: 26097
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)