Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_C06
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 32 0.13
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 29 0.89
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165 27 2.7
02_05_1081 + 33971950-33972606 27 3.6
09_06_0110 + 20923523-20924065 27 4.7
09_03_0063 - 11976529-11977491,11980540-11981307 26 6.2
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 26 6.2
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745... 26 8.3
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 26 8.3
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 26 8.3
01_02_0078 - 10894871-10895841,10897268-10898426 26 8.3
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 194 LYSQPPTVLSAMLQHDGAFGWVPQRLTAVVLHVMYNGISF 313
L S PP ++ A+++H + GW+ QR+ +LH+ + + F
Sbjct: 926 LGSLPPEIMQALVEHYSSKGWL-QRVEQCILHMDISSLDF 964
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 29.1 bits (62), Expect = 0.89
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = -1
Query: 252 PNAPSCCSIAERTVGGCEYRSRVQNTTAAGLSEYIIIIK*QRNDTRVRLNRRLGSTDNPL 73
PN+PS +I GG + S AA ++ IK + +RL RLG+T++PL
Sbjct: 555 PNSPSIPTIG----GGPKVESLSPRERAAERERMVLDIKVKLQGLWLRL-LRLGATEDPL 609
Query: 72 TGFRNG 55
+ F G
Sbjct: 610 SSFEYG 615
>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
Length = 476
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 302 RCTLRVIPPLLAAVEPNRMRHRAAASPKGQWAAVSTDLV 186
RC R P L A + R A P+ WA+++ DL+
Sbjct: 8 RCPKRPAPQLAVAPCAATAKRRRLAPPESPWASLNPDLL 46
>02_05_1081 + 33971950-33972606
Length = 218
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 266 AVEPNRMRHRAAASPKGQWAAVSTDLVFR 180
A +P R RH AASP + AAVS+ V +
Sbjct: 27 ASKPRRRRHSKAASPPPKVAAVSSPPVVK 55
>09_06_0110 + 20923523-20924065
Length = 180
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -2
Query: 278 PLLAAVEPNRMRHRAAASPKGQWAAVSTDLVFRIQPPQAC 159
P+ P++ R AA+ + +TD ++ + PP +C
Sbjct: 96 PIPVQAAPSKKRAAAASQQEAAEWTTTTDSLYSVSPPPSC 135
>09_03_0063 - 11976529-11977491,11980540-11981307
Length = 576
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/54 (22%), Positives = 22/54 (40%)
Frame = -1
Query: 330 PIEATVNDIPLYITCNTTAVSRCGTQPNAPSCCSIAERTVGGCEYRSRVQNTTA 169
P +N ++ C+++ + + P C V G YR RV + T+
Sbjct: 194 PQSLLINGRGRFVNCSSSPATAASCNVSHPDCAPAVFAVVPGKTYRFRVASVTS 247
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 99 RLGSTDNPLTGFRNGCHS-RRSDEQIRN 19
+LGSTD+P R+ CH+ R DE+ R+
Sbjct: 472 QLGSTDSPPRILRSLCHALRNMDEEPRD 499
>07_01_1105 -
10173039-10173156,10173715-10173716,10174550-10174584,
10174696-10174765,10175163-10176707,10176770-10178062
Length = 1020
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 93 PNDDSNVPECRCV 131
PN+ + VP+CRCV
Sbjct: 764 PNEANRVPDCRCV 776
>06_01_0007 +
130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 238 RWRIRLGSTAANSGGITRNVQRYIIHSSFN 327
RWR+ G A+ G + + IIH SF+
Sbjct: 658 RWRLLAGRKASEDGDLLLSAAVPIIHQSFD 687
>03_05_0884 -
28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 43 TAVAAVPEASQRIIGGAQTTIQTYPSVVALLFXXXXVFRQACGGCILNTRSVLTAAHCPF 222
TA++A R+ A TTI + L + R +C G IL+ S L ++ F
Sbjct: 666 TALSAA--LGSRVEVAAMTTISGVKATYLLAVAFLEILRFSCNGGILSATSTLNKSNSAF 723
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 308 IYRCTLRVIPPLLAAVEPNRMRHRAAA 228
I RC R PP L P RHR+AA
Sbjct: 632 IRRCRHRYSPPSLDPPSPELGRHRSAA 658
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,081,514
Number of Sequences: 37544
Number of extensions: 203532
Number of successful extensions: 578
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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