Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_C05
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 27 0.77
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 27 0.77
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 1.0
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 26 1.8
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 2.3
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 25 3.1
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 25 3.1
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 25 3.1
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 25 3.1
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 24 7.1
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 24 7.1
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone... 24 7.1
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 23 9.4
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 23 9.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 23 9.4
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 23 9.4
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 23 9.4
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 0.77
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 70 PIVGEDCKGDRKKLLVDYFHANLNTQNFYAFRFFICEVLNFINVVGQIFFMDFFLDG 240
PI + D + L FH +T FF+ + NF+ V F DF L G
Sbjct: 156 PIFSKRKYNDTENLYEQPFHLEFDTCQELLSLFFLKQYHNFMFVFRDYFIRDFELGG 212
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 27.1 bits (57), Expect = 0.77
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 103 KKLLVDYFHANLNTQNFYAFRFFICEVLNFINVVGQI----FFMDFFLDGEFSTYGSDVV 270
KKLL+D N N N ++ +FIC +++ + V G I F D E + + V+
Sbjct: 847 KKLLLDLLCYNDNANNEFSDAYFICLLIDSL-VEGLIPRGETVQYAFSDPEHMEFVNQVI 905
Query: 271 NFTEMEPEQRVDPMARVFPKV 333
N E++ R+D F +
Sbjct: 906 N--EIDRYMRIDACMPSFKNI 924
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 26.6 bits (56), Expect = 1.0
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -3
Query: 216 EYLTNDVNKIQYLTNKETERIKILRVQISVKIINE*FLAVSLTVFA 79
EYL ++N+++ N E E K+LR+ +K + + L+ TVF+
Sbjct: 448 EYLMEELNELK--NNLEVESSKVLRLDEEMKCLKDEQLSQFDTVFS 491
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 1.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 13 LWKTWEGGRIKMLVLDLNCPIVGEDCKGDRKKLLVDYFHANLNTQ 147
+W G +K LV +N P+ +RK LLV +NLN+Q
Sbjct: 206 IWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLV----SNLNSQ 246
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 193 INVVGQIFFMDFFLDGE 243
++ GQ F++DF LDG+
Sbjct: 372 VHTSGQFFYLDFLLDGK 388
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 13 LWKTWEGGRIKMLVLDLNCPIVGEDCKGDRKKLL 114
L+ W+ ++ +LDL + EDCK +++L+
Sbjct: 9 LYNRWKALERQLEMLDLQEGFIKEDCKSLKRELI 42
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 146 KIFMRSVSLFVRY*ILLTSLVRYSSWTSFLMAN 244
K+FMRS + IL+ L+ YS W S + N
Sbjct: 127 KLFMRSTVIASHLLILVPPLMFYSKWWSRRIPN 159
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 112 LVDYFHANLNTQNFYAFRFFICEVLNF 192
LV Y ANL + A FF C L F
Sbjct: 193 LVMYAIANLLKNQYVAATFFFCLALTF 219
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 245 SPRTAVMLSTS-PRWSRSNA*TRWH 316
+PRT V + + P W + N RWH
Sbjct: 2 APRTIVKVDLNKPAWEQPNLHNRWH 26
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 3.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 282 LGEVDNITAVRGEFAIKKEVHEEYLTNDV--NKIQYLTNKETERIKILRVQ 136
LG DN++ + + ++ E HEE + V NK T + RIK L +Q
Sbjct: 119 LGYRDNVSLTQIKTYLEMESHEEKIQEIVSRNKEIEATEERKRRIKQLELQ 169
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 7.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 183 YLTNKETERIKILRVQISVKIINE*FLAVSLTVFAY-NGAVEIKDQHFDA 37
YLTN+E + I++ ++V+I + L+ F Y + + +K Q DA
Sbjct: 425 YLTNEEKKMASIIKDSVNVQIK---LIESKLSHFDYLDQHIRLKSQELDA 471
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 23.8 bits (49), Expect = 7.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 46 MLVLDLNCPIVGEDCKGDRKKLLVDYF 126
ML+LDLN V D G LV+YF
Sbjct: 970 MLILDLNGNTVYYDTMGRDLSKLVNYF 996
>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
regulator|Schizosaccharomyces pombe|chr 2|||Manual
Length = 195
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 190 FINVVGQIFFMDFFLDGEFSTYGSDVVNFTEMEPEQR 300
F + G+I +D ++D E S + VN +P+Q+
Sbjct: 103 FSRISGEIKAIDQYVDKELSPMYDNYVNKPSNDPKQK 139
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 43 KMLVLDLNCPIVGEDCKGDRKKLLVDYFHAN 135
K + +DL+ ++G+D K + L V + H N
Sbjct: 446 KSMTIDLSKTLLGDDIKKEVNALGVIFVHIN 476
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 217 FMDFFLDGEFSTYGSDVVNFTEMEPEQRVDPMARVFPKV 333
FM+ F +F+ Y VN T+ + + V A +FPK+
Sbjct: 121 FMNAFTASDFTFYPFATVNTTDYKNLRDVYLDATLFPKL 159
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 148 NFYAFRFFICEVLNFI 195
NF+A FF+C +L F+
Sbjct: 1773 NFFAADFFLCHLLLFL 1788
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 264 ITAVRGEFAIKKEVHEEYLTNDV 196
+ A RG+ ++K V E+YL ND+
Sbjct: 23 VRATRGK--VQKVVREQYLRNDI 43
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -3
Query: 282 LGEVDNITAVRGEFAIKKEVHEEYLTNDVNKIQY 181
+ + D++T + A K+++ EE++ +D+N Y
Sbjct: 177 IAKSDSLT-LEERAAFKQQIREEFVKHDINLYPY 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,904
Number of Sequences: 5004
Number of extensions: 27320
Number of successful extensions: 100
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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