Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_C05
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0730 + 6505759-6508806 28 2.2
12_01_0714 + 6223269-6226250 28 2.2
07_03_1032 + 23390622-23390960 27 3.8
03_06_0237 - 32566999-32567086,32567742-32567772,32567832-32569197 26 6.6
01_07_0146 + 41464554-41464943,41465607-41465945,41467582-414676... 26 6.6
01_07_0142 + 41433580-41433969,41434633-41434971,41436609-414366... 26 6.6
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 26 6.6
12_01_0686 - 5855216-5858263 26 8.7
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 26 8.7
04_04_0790 + 28083116-28083337,28083446-28083652,28083739-280838... 26 8.7
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 26 8.7
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 1 VPRYLWKTWEGGRIKMLVLDL---NCPIVGEDCKGDRKKLLVDYFHANLNT 144
+P++ WKTW+G ++ +VL++ N +G D L V+YF + N+
Sbjct: 549 IPQWAWKTWKG--LQFIVLNISHNNFTSLGSD---PFLPLYVEYFDLSFNS 594
>12_01_0714 + 6223269-6226250
Length = 993
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 1 VPRYLWKTWEGGRIKMLVLDL---NCPIVGEDCKGDRKKLLVDYFHANLNT 144
+P++ WKTW+G ++ +VL++ N +G D L V+YF + N+
Sbjct: 527 IPQWAWKTWKG--LQFIVLNISHNNFTSLGSD---PFLPLYVEYFDLSFNS 572
>07_03_1032 + 23390622-23390960
Length = 112
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 169 FICEVLNFINVVGQIFFMDFFLDG 240
+IC ++FI++ G + F+D +DG
Sbjct: 37 WICSAIDFIDMEGGVAFIDIAMDG 60
>03_06_0237 - 32566999-32567086,32567742-32567772,32567832-32569197
Length = 494
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 211 IFFMDFFLDGEFSTYGSDVVNFTEMEPEQRVDP 309
+F D F DG S G D V F E + + P
Sbjct: 402 LFDPDIFADGRISVQGIDAVLFPPAETKTKTKP 434
>01_07_0146 +
41464554-41464943,41465607-41465945,41467582-41467662,
41468487-41468578,41468667-41468710,41468788-41468843,
41469656-41469814,41469922-41469957,41470130-41470231
Length = 432
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 275 KLTTSLPYVENSPSRKKSMKNI*PT 201
+++TSLP E +RKK++K PT
Sbjct: 323 QMSTSLPAAEKKAARKKALKGWDPT 347
>01_07_0142 +
41433580-41433969,41434633-41434971,41436609-41436689,
41437514-41437605,41437694-41437737,41437815-41437870,
41438683-41438841,41438949-41438984,41439157-41439258
Length = 432
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 275 KLTTSLPYVENSPSRKKSMKNI*PT 201
+++TSLP E +RKK++K PT
Sbjct: 323 QMSTSLPAAEKKAARKKALKGWDPT 347
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 101 RSPLQSSPTMGQLRSRTSILMRPPSHVFHR 12
R+P+ S M Q+ S++ IL+RP H+ R
Sbjct: 672 RAPVNSWWEMCQITSKSVILVRPDEHIAWR 701
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/22 (36%), Positives = 18/22 (81%)
Frame = +1
Query: 1 VPRYLWKTWEGGRIKMLVLDLN 66
+P++ WKTW+G ++ L+L+++
Sbjct: 549 IPQWAWKTWKG--LQFLLLNMS 568
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -3
Query: 288 LHLGEVDNITAVRGEFAIKKEVHEEYLTNDVNKIQYLTNKETERIKILRVQISVKIIN 115
+H ++DN G F+ K + Y D+ ++ K ER + ISV I+
Sbjct: 793 VHQVDIDNHVLPLGNFSGKSQPSGRYFLRDLGSSGSMSLKSEERNAVSHGNISVSSIH 850
>04_04_0790 +
28083116-28083337,28083446-28083652,28083739-28083809,
28083898-28084063,28084189-28084788,28084928-28085323
Length = 553
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -3
Query: 228 EVHEEYLTNDVNKIQYLTNKETERIKILRVQIS 130
E + + ND + +LTNK + K+ R+ ++
Sbjct: 272 EAYYALIANDDTQFTFLTNKNAPKYKLSRIDVN 304
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 324 KDACHRVYALLR-LHLGEVDNITAVRGEFAIKKEVHEEYLTNDVNKIQYLTNKETERIKI 148
K A ++A + + LG +N+T + + + E HEE L V + + K+ R K+
Sbjct: 135 KAAFELLFAFIEAISLGNKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKV 194
Query: 147 LRVQIS 130
++ S
Sbjct: 195 TEIEKS 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,616,070
Number of Sequences: 37544
Number of extensions: 178571
Number of successful extensions: 432
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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