Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C04
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    29   0.16 
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   2.6  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    24   3.5  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    24   4.6  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    24   4.6  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    23   6.1  
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      23   6.1  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    23   6.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   6.1  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    23   6.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.0  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    23   8.0  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    23   8.0  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    23   8.0  

>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 28.7 bits (61), Expect = 0.16
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 90  YTR*QLCHRRYVFAEKSIVPS-AGQMVRRTRTRVKFFCESNMTHSNMTIVKNTACEVGIP 266
           YT    C  R +F + +++P   G + + T  ++   C S  +   + +VK+TA +V I 
Sbjct: 165 YTSLDECKSRAIFTDPNLIPKLLGPLKQSTWVKL-IVCSSTPSEDLVELVKSTAPDVEII 223

Query: 267 CY 272
            Y
Sbjct: 224 TY 225


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 189 SHGFSYVLPSDPQTGL*IFPQIHNGGGRAVT 97
           ++G SYVL +DP      F +  NG  R  T
Sbjct: 296 ANGISYVLATDPDADRFAFAEKINGAWRRFT 326


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 227 HIAVCHV*LAKKFHTGSRTSYHLTRRRD 144
           +I+ C V +AKK +T  +  Y L   RD
Sbjct: 251 YISRCRVNIAKKQYTNVQNEYELMFERD 278


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 134 FRKYITAVAELLPSILAQRRSEEYR 60
           F KY  A+  LL ++L Q   +E+R
Sbjct: 531 FEKYFDAIMPLLFNVLQQADGKEFR 555


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 258 PPRMRCFSRWSYCCVSCLTRKKISHGFSYVLPSDPQTGL*IFPQIHNGG 112
           P ++  F+  S C       +K+    S +LPSDP   + + PQI   G
Sbjct: 278 PSKLHTFALESLCFSPAPFIQKV---LSRLLPSDPNVEMPMIPQILEKG 323


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -1

Query: 278 GTVTGDAHLACGVFHDGHIAVCHV*LAKKFHTGSRTSYHLTRRRDYRFFRKYIT 117
           G +T  A     +   GH+ +  +  A    T S TSY  T     R FRK +T
Sbjct: 375 GPLTTTASNTPALASSGHVLIIPIAHASALSTLSDTSYEKTLNEMNR-FRKAVT 427


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 198 KKISHGFSYVLPSDPQTGL*IFPQIHNGGGRAVTEYISAAAI 73
           +K+S     V+ S+P T L +FP++   G      +   A I
Sbjct: 22  QKMSSYVHEVMESNPSTNLILFPELITSGYECGNTFTQIAEI 63


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 267 RGCPPRMRCFSRWSYCCVSCLTRKKISHGFS 175
           RG   R+R       C + CLTR  +S G S
Sbjct: 180 RGNAKRLRQLRDEHACKIGCLTRAIMSEGVS 210


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 120 YVFAEKSIVPSAGQMVRRTRTRVKFF 197
           YVF E  +        R+T+TR K F
Sbjct: 205 YVFGESDVANELKDPSRKTKTRKKVF 230


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 170 SYHLTRRRDYRFFRKYITAVAELLPSILAQRRSEEYRVNSFC 45
           S+HLT   D+  F  +   + +L+P    Q  + E  +N FC
Sbjct: 154 SFHLTSIFDHSIFEAFSRVIQKLIP----QLPTLENLLNIFC 191


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 75   SPLR*YTR*QLCHRRYVFAEKSIVP 149
            SP   Y R   CHRR    EK I+P
Sbjct: 1695 SPRFTYYRHTKCHRRNEKNEKEIIP 1719


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 134 FRKYITAVAELLPSILAQRRS 72
           FR+ +  V  +LPSILAQR S
Sbjct: 4   FRRSVQCVG-VLPSILAQRSS 23


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = -1

Query: 101 LPSILAQRRSEEYRVNSF 48
           +P +++++R+ E+R N+F
Sbjct: 710 IPKVISEQRNREHRPNAF 727


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +2

Query: 125 IC-GKIYSPVCGSDGKTYENPC 187
           IC G +Y PV    G T+  PC
Sbjct: 171 ICFGMLYDPVVSPCGHTFCGPC 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,327
Number of Sequences: 5004
Number of extensions: 22688
Number of successful extensions: 63
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)