Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_C04
(278 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681... 29 0.70
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 29 0.70
12_02_0958 + 24814588-24814704,24814957-24815380,24815458-248156... 26 3.7
12_01_0415 + 3292576-3293727 26 3.7
03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958... 26 4.9
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248... 26 4.9
01_07_0379 + 43177978-43178572,43178643-43178674 25 6.5
09_04_0353 + 16915618-16916934 25 8.6
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 25 8.6
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835... 25 8.6
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 25 8.6
01_07_0121 - 41194049-41194558 25 8.6
>11_04_0376 -
16965504-16966101,16966212-16966416,16967175-16968197,
16968241-16968892,16969025-16969387,16970095-16970451
Length = 1065
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 111 HRRYVFAEKSIVPSAGQMVRRTRTRVKFFCE 203
H E IVP ++ RTRT ++ FCE
Sbjct: 121 HEEQFSTESGIVPVPSELADRTRTVIQRFCE 151
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 167 YHLTRRRDYRFFRKYITAVAELLPSIL 87
YHL R DY ++R+++ V ELL + L
Sbjct: 864 YHLLRLYDYFYYREHLLIVCELLKANL 890
>12_02_0958 +
24814588-24814704,24814957-24815380,24815458-24815669,
24815853-24816120,24816226-24816416,24816635-24816895
Length = 490
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 195 FCESNMTHSNMTIVKNTACEVGIPCYCT 278
F S +H + I +ACE G+PC T
Sbjct: 101 FIYSGNSHFKVWIYDPSACEKGLPCIIT 128
>12_01_0415 + 3292576-3293727
Length = 383
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 117 GGGRAVTEYISAAAIRRIPS*FILC 43
GGG E +S A IRR+ FILC
Sbjct: 38 GGGGGGEEILSVAWIRRLLEAFILC 62
>03_02_0844 +
11695159-11695263,11695402-11695463,11695789-11695876,
11695958-11696019,11696250-11696346,11696592-11696984,
11697072-11697611,11697856-11697966,11698102-11698242,
11698290-11698394,11698480-11698557,11699346-11699472,
11699580-11699625,11699709-11699754
Length = 666
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 264 GCPPRMRCFSRWSYCCVSC 208
G P+ C S W++ C+SC
Sbjct: 34 GLGPQYVCTSFWTFVCISC 52
>01_02_0091 -
11023912-11024017,11024112-11024185,11024478-11024834,
11024938-11025166,11025468-11025559,11026099-11026326,
11027108-11027356,11027429-11027471,11027589-11027836,
11027922-11028035,11028122-11028322,11028417-11028593,
11028725-11028853,11029210-11029287,11029369-11029464,
11029563-11029634,11031549-11031677,11032105-11032220,
11033048-11033204,11033343-11033426,11033513-11033574,
11034901-11035067,11035162-11035226,11035315-11035371,
11035547-11035633,11036638-11036703,11036810-11036908
Length = 1193
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Frame = -1
Query: 179 SRTSYHLTRRRDYRF---------FRKYITAVAELLPSILAQRRSEE-YRVNS 51
S+ YHL + Y F R Y AELLPS+L EE YR NS
Sbjct: 831 SKAGYHLKQTGPYTFSCQKLGQILVRIYGEQDAELLPSVLLSLSGEEGYRNNS 883
>01_07_0379 + 43177978-43178572,43178643-43178674
Length = 208
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 185 TGSRTSYHLTRRRDYRFFRKYITA 114
T S+T +HL R +YR++ Y+ A
Sbjct: 173 TSSKTIFHLHPRWEYRWYLLYLCA 196
>09_04_0353 + 16915618-16916934
Length = 438
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 95 SVTALPPPLCICGKIYSPVCGSDGKTYE 178
S +LP +C +YSP+C + Y+
Sbjct: 134 SYASLPCSSAMCNALYSPLCFQNACVYQ 161
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 220 LCVMFDSQKNFTRVLVRL 167
LCV++D K F +VLV+L
Sbjct: 855 LCVLYDLAKVFCKVLVKL 872
>05_07_0236 -
28582157-28582552,28582639-28582911,28583324-28583560,
28583653-28583694,28583782-28583964,28584393-28584524,
28585605-28586057
Length = 571
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 180 TRVKFFCESNMTHSNMTIVKNTACEV 257
T ++F+ SN+T + +TIV ++ C +
Sbjct: 270 TALRFYGSSNVTVTGITIVNSSQCHL 295
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 25.0 bits (52), Expect = 8.6
Identities = 5/9 (55%), Positives = 9/9 (100%)
Frame = -3
Query: 231 WSYCCVSCL 205
W+YCC++C+
Sbjct: 432 WTYCCINCM 440
>01_07_0121 - 41194049-41194558
Length = 169
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 173 TSYHLTRRRDYRFFRKYITAVAELLPSILAQRRSEEY 63
+SY ++RR YR +K TA P + Q + + Y
Sbjct: 3 SSYLMSRRFSYRRLKKLPTAAVAAPPDVPQQLQEQYY 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,290,749
Number of Sequences: 37544
Number of extensions: 160730
Number of successful extensions: 387
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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