Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C04
         (278 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.002
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.17 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   2.8  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   4.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   6.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      19   8.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   8.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 31.9 bits (69), Expect = 0.002
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 128 CGKIYSPVCGSDGKTYENPCEIFLRVKH 211
           C + + PVC S+GK Y N CE+     H
Sbjct: 110 CPRRHRPVCASNGKIYANHCELHRAACH 137


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.17
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 131 RKYITAVAELLPSILAQRRSEEYRVNSFCV 42
           RK  T    ++ S   Q++SEE  +N  CV
Sbjct: 795 RKTATTTQPVISSRKEQKKSEEKNINDHCV 824


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 203  VKHDTQQYDHREKHRMR 253
            V H T +Y  +E+H MR
Sbjct: 1071 VPHSTLEYKVKERHLMR 1087


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 114 RRYVFAEKSIVPSAGQM 164
           RR +FA + ++ SAG +
Sbjct: 308 RRIIFARREVILSAGSV 324


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 46  QNELTRYSSDRRCA 87
           Q+  +RYS +RRC+
Sbjct: 225 QHTSSRYSRERRCS 238


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +2

Query: 23  FVPFIFKHKMN*LGXXXXXXXXXYSVTALPPPLCICGKIYSPVCGSD 163
           +VP I  H +  +G           V      LC+    Y+PVC  D
Sbjct: 116 WVPDIVMHSVTSVGIDLEMPSVECIVFNSGTILCVPFTTYTPVCEYD 162


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 173 YENPCEIFLRVKHDTQQYDHREKHRMRGG 259
           Y+N  E F R+  +T  YD +    M  G
Sbjct: 217 YQNSDESFHRLTSNTFDYDPKYIKMMDAG 245


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 173 YENPCEIFLRVKHDTQQYDHRE 238
           Y+N    FLR K    QY   E
Sbjct: 424 YQNILSYFLRYKKLQPQYSQSE 445


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 171  VLPSDPQTGL*IFPQIHNGGGRAVTEY 91
            VL   P T   +    HN  G AV EY
Sbjct: 1521 VLDLVPATWYHLRVTAHNNAGFAVAEY 1547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,456
Number of Sequences: 438
Number of extensions: 1609
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)