Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C03
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   3.6  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.8  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    26   4.8  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   8.3  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 105  WIPFWRQQRWNSIRGERMVDFRRTCAAF 188
            W  F+   RW +IR E + D    C AF
Sbjct: 1120 WFMFFSSSRWQAIRVECIGDLIIFCTAF 1147


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 374 SIQRQRLDPRKGTTRKFQRRTY 439
           SI +  L PR GT  +FQ RTY
Sbjct: 653 SIDKLSLCPRLGTCGRFQLRTY 674


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 328 MHYMKTLKHGHTTPPFHPASKT*ST*RNYQKVSEKNLYVTEQNPSHYRSH 477
           + Y+KT K       F PA+K  +     +K+  KN Y+ +     YRS+
Sbjct: 449 LRYLKTAKVSLNEFEF-PANKVANVQSQLEKLVSKNYYLQQSAKDGYRSY 497


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 74  SIWTVINGGILDTILASAAMEQYT 145
           +IWT+I   +++TIL+ A  EQ T
Sbjct: 343 NIWTIICEKLVETILSVAFTEQST 366


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 406 RNYQKVSEKNLYVTEQNPSHYRS 474
           RNY  ++EK  YVT ++ SH+R+
Sbjct: 120 RNYL-LTEKGFYVTTRSISHFRA 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,359
Number of Sequences: 5004
Number of extensions: 55139
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)