Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C03
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0581 + 18930601-18930777,18930856-18930965,18931037-189313...    32   0.40 
10_08_0879 - 21255033-21255236,21255292-21255465,21255558-212556...    29   2.8  
08_01_0664 + 5741111-5741113,5741491-5741658,5741741-5741864,574...    29   2.8  
03_06_0438 - 33917678-33918084,33929568-33930402,33931055-339313...    28   4.9  
07_01_0142 + 1054495-1054644,1054767-1055971,1056102-1056180,105...    28   6.5  
03_05_0862 + 28353235-28354431                                         28   6.5  
01_01_0003 + 11774-12813,12906-13271,13359-13437,13840-13968,139...    27   8.5  

>10_08_0581 +
           18930601-18930777,18930856-18930965,18931037-18931307,
           18931403-18931541,18932410-18932630,18932723-18932769,
           18933390-18933755,18934049-18934127,18934697-18934890,
           18935305-18935422
          Length = 573

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
 Frame = +1

Query: 64  MQNFHMDGHQWWDIGYHFG---VSSDGTVYEGRG--WSTLGAHALHFNSVSIGICLIGDW 228
           MQ++HMDG+ ++ +G  +G     S GT  +G G   ST+  +   + +V + +  +G W
Sbjct: 430 MQSYHMDGYAFFVVGMDYGEWTEDSRGTYNKGDGVARSTVQVYPGAWAAVLVSLDNVGVW 489

Query: 229 RVSLPPADQI---KAT*VHSTNW*DTGKCEQRNVPGMHYMKTLKHGHTTP 369
            V     D     +   V   N  DTG   +  +P         H   TP
Sbjct: 490 NVRSENLDSWYLGQEVYVRVVNPEDTGNKTEMAIPDNALFCGQLHKQQTP 539


>10_08_0879 -
           21255033-21255236,21255292-21255465,21255558-21255690,
           21255769-21255854,21256593-21256742,21256804-21256904,
           21257058-21257355
          Length = 381

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 339 HIMHPRDIPLLALAGVLPVCTVDLCSFDLIRRW 241
           H+  P+  P L+  G LPV T+   SF+L  RW
Sbjct: 238 HVFPPKHAPNLSFVG-LPVKTIMFQSFELESRW 269


>08_01_0664 +
           5741111-5741113,5741491-5741658,5741741-5741864,
           5742078-5742169,5742254-5742352,5742476-5742589,
           5743190-5743254,5743342-5743467,5743870-5743945,
           5744502-5744594,5744944-5744994,5745084-5745182
          Length = 369

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = -1

Query: 183 QRMCA*SRPSSPLVYCSIAADAKMVSNIPPLMTVHMEVLHTPHGFTASLSSVACRWYVR 7
           +R+ A   P     YC+    A+    IP ++      +H  + FTA    V C W +R
Sbjct: 239 ERLLADMPPDEAAKYCAENQIARQAIVIPKIIKTGFAAIHLIYFFTAGPDEVKC-WQIR 296


>03_06_0438 -
           33917678-33918084,33929568-33930402,33931055-33931335,
           33931358-33931451,33931549-33931857
          Length = 641

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 10  YIPAACHTRETCCKAMRSMQNFHMDGHQWWDIGYHFGV 123
           Y+P    + ET      S  +F  +   WWD+G   GV
Sbjct: 229 YLPCRMSSSETSSSTSSSGTHFRDEWSTWWDMGAIVGV 266


>07_01_0142 +
           1054495-1054644,1054767-1055971,1056102-1056180,
           1056619-1056822
          Length = 545

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 64  MQNFHMDGHQWWDIGYHFG 120
           +Q++H+DG+ +W +GY  G
Sbjct: 438 LQSWHLDGYDFWVVGYGNG 456


>03_05_0862 + 28353235-28354431
          Length = 398

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = +3

Query: 279 YKLVGHRQVRATECPGDALYENIKTWTHYSAFPSSVKDLIHVKELPESFREELIRNRTKS 458
           Y+ V HR   AT  PGD  ++++K     ++ P+ V   +H  +L  + R  ++    + 
Sbjct: 181 YRQVHHRNQWATARPGDRAWKSVKP----TSIPAVVDVAVHRGQLYANTRYGMVYAFPEL 236

Query: 459 ESLPLA*PYLVSFISKK 509
             L  A P ++  ++++
Sbjct: 237 RGLGSASPEIIPSVTRR 253


>01_01_0003 +
           11774-12813,12906-13271,13359-13437,13840-13968,
           13969-14171,14266-14359
          Length = 636

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 8/26 (30%), Positives = 20/26 (76%)
 Frame = +1

Query: 61  SMQNFHMDGHQWWDIGYHFGVSSDGT 138
           S+Q++H+DG+ ++ +G  +G+ +D +
Sbjct: 454 SVQSYHLDGYAFFVVGMDYGLWTDNS 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,469,492
Number of Sequences: 37544
Number of extensions: 374990
Number of successful extensions: 969
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)