Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C03
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66499-6|CAA91299.2|  765|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF063007-4|AAC16429.3|  253|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z66499-6|CAA91299.2|  765|Caenorhabditis elegans Hypothetical
           protein T01B7.6 protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = +3

Query: 261 SYISPQYKLVGHRQVRATECP--GDALYENIKTWTHYSAFPSSVKDLIHVKEL-PESFRE 431
           +YI   Y +   RQ  A  C     A+Y++ +  T     P+ +++  H+K+L P +  +
Sbjct: 107 AYIDKPYLIYIFRQEEAHGCKFVAWAIYDDTRKTTSVPPTPTDIQNTSHMKKLGPPTAVQ 166

Query: 432 ELIRNRTKSESLPLA*PYLVSFISKKYLVTNTSQTC 539
              ++  +S     A   ++  IS  Y+++ TS TC
Sbjct: 167 R--QSDHQSVEFVQAQSGVIYDISDNYVISVTSPTC 200


>Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical
           protein B0464.6 protein.
          Length = 643

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 441 RNRTKSESLPLA*PYLVSFISKKYLVTNTSQTCLQKCLPTY 563
           R+  KS  LP   P+L    ++KYL++   + C  + +  Y
Sbjct: 448 RDSLKSSDLPFLLPFLSVHPNQKYLISRIKELCATQFMDAY 488


>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 149 PSYTVPSLLTPKWYPIS 99
           PSY+VPS   PK YP++
Sbjct: 344 PSYSVPSYTAPKKYPVA 360


>AF063007-4|AAC16429.3|  253|Caenorhabditis elegans Hypothetical
           protein R119.3 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 291 GHRQVRATECP---GDALYENIKTWTHYSAFPSSVKDLIHVKELPESFREEL 437
           G++   A +CP   G    +NIK     +AF   V +  H KEL     E+L
Sbjct: 25  GYKVAAAADCPNSVGKVAEDNIKVGGDVTAFSLDVANAEHRKELITKVAEKL 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,710,996
Number of Sequences: 27780
Number of extensions: 317327
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)