Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C03
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.9  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 273 PQYKLVGHRQVRATE 317
           PQ+K++GHRQ RA E
Sbjct: 186 PQFKVLGHRQ-RAME 199


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 273 PQYKLVGHRQVRATE 317
           PQ+K++GHRQ RA E
Sbjct: 125 PQFKVLGHRQ-RAME 138


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 273 PQYKLVGHRQVRAT 314
           PQ++++GHRQ  +T
Sbjct: 186 PQFRVLGHRQRHST 199


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = +1

Query: 91  QWWDIGYHFGVSSDGTVYEGR 153
           +W+D+G ++ + S+  +Y+ +
Sbjct: 55  EWYDVGRNYDMESNMDMYKDK 75


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = +1

Query: 91  QWWDIGYHFGVSSDGTVYEGR 153
           +W+D+G ++ + S+  +Y+ +
Sbjct: 55  EWYDVGRNYDMESNMDMYKDK 75


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 84  RSSMVGYWIPFWRQ 125
           R +    WIP WRQ
Sbjct: 415 RQTQTEVWIPKWRQ 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,522
Number of Sequences: 438
Number of extensions: 3794
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)