Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C02
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270...    33   0.25 
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916...    33   0.25 
10_02_0176 + 6215326-6215352,6216870-6217445                           29   3.1  
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498...    27   9.4  
02_04_0200 + 20866188-20866251,20866327-20867201                       27   9.4  

>05_04_0078 +
           17725931-17726057,17726128-17726305,17726942-17727023,
           17728500-17728676,17728763-17728930,17729028-17729219
          Length = 307

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 183 RRTATTSGVPPDIRIHTYIHELYRYIFTRAYN*QVNSLETSLLQNLHESFLCTGLL 350
           R+T +  G      I   IH L R+ ++ A N + N LE  +L NLH+     GL+
Sbjct: 173 RQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLI 228


>01_01_1151 +
           9165454-9165580,9165658-9165835,9167256-9167337,
           9167907-9168083,9168174-9168341,9168466-9168657
          Length = 307

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 183 RRTATTSGVPPDIRIHTYIHELYRYIFTRAYN*QVNSLETSLLQNLHESFLCTGLL 350
           R+T +  G      I   IH L R+ ++ A N + N LE  +L NLH+     GL+
Sbjct: 173 RQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLI 228


>10_02_0176 + 6215326-6215352,6216870-6217445
          Length = 200

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 287 YLLVVRARKYISIQFMYVCMYADIRWNPGSGRSASHRVH 171
           ++LV   R  +  ++ Y C Y D+ W+ G G  + H VH
Sbjct: 164 FILVTFLRNILFTRYTY-CSYEDVEWSSGGG--SCHGVH 199


>07_01_0664 +
           4979892-4979931,4980040-4980236,4982340-4982723,
           4983499-4983549,4983659-4983741,4983818-4983917,
           4984410-4984488,4984957-4985080,4985605-4985711,
           4985810-4985938,4987004-4987089,4987200-4987367,
           4987477-4987637,4987721-4987752,4987866-4988047,
           4988386-4988465,4988885-4988950,4989060-4989349,
           4990433-4990540,4991521-4991618,4991680-4991782,
           4992269-4992345,4992449-4992520,4992579-4992670,
           4992909-4992989,4993290-4993392,4994334-4994492,
           4994696-4995085
          Length = 1213

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 70  FLTFYLNIIKIKNNYSTIFKTQPS 141
           FLT+ L    I+N  ST+FK  PS
Sbjct: 637 FLTYKLRTFLIRNGLSTLFKDGPS 660


>02_04_0200 + 20866188-20866251,20866327-20867201
          Length = 312

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 222 RIHTYIHELYRYIFTRAYN*QVNSLETSLLQNLH 323
           R HT   E++ Y+  R Y  +  +L  SLLQNLH
Sbjct: 61  RDHTTAKEMWDYLKQR-YTQESGALRFSLLQNLH 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,791,071
Number of Sequences: 37544
Number of extensions: 244924
Number of successful extensions: 829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)