Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C02
         (633 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015804-1|AAH15804.1|  481|Homo sapiens SF3A2 protein protein.        27   4.5  
L21990-1|AAA60301.1|  464|Homo sapiens spiceosomal protein protein.    27   4.5  
BC009903-1|AAH09903.1|  464|Homo sapiens splicing factor 3a, sub...    27   4.5  
BC004434-1|AAH04434.1|  464|Homo sapiens splicing factor 3a, sub...    27   4.5  
AC005263-1|AAC25613.1|  464|Homo sapiens SP62_HUMAN protein.           27   4.5  

>BC015804-1|AAH15804.1|  481|Homo sapiens SF3A2 protein protein.
          Length = 481

 Score = 26.6 bits (56), Expect(2) = 4.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 565 PVRSPPPAAGAHPP 606
           P + PPPA G HPP
Sbjct: 277 PPQLPPPAPGVHPP 290



 Score = 22.6 bits (46), Expect(2) = 4.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 580 PPAAGAHPPLRSI 618
           PPA G HPP   +
Sbjct: 317 PPAPGVHPPTSGV 329


>L21990-1|AAA60301.1|  464|Homo sapiens spiceosomal protein protein.
          Length = 464

 Score = 26.6 bits (56), Expect(2) = 4.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 565 PVRSPPPAAGAHPP 606
           P + PPPA G HPP
Sbjct: 277 PPQLPPPAPGVHPP 290



 Score = 22.6 bits (46), Expect(2) = 4.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 580 PPAAGAHPPLRSI 618
           PPA G HPP   +
Sbjct: 317 PPAPGVHPPTSGV 329


>BC009903-1|AAH09903.1|  464|Homo sapiens splicing factor 3a,
           subunit 2, 66kDa protein.
          Length = 464

 Score = 26.6 bits (56), Expect(2) = 4.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 565 PVRSPPPAAGAHPP 606
           P + PPPA G HPP
Sbjct: 277 PPQLPPPAPGVHPP 290



 Score = 22.6 bits (46), Expect(2) = 4.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 580 PPAAGAHPPLRSI 618
           PPA G HPP   +
Sbjct: 317 PPAPGVHPPTSGV 329


>BC004434-1|AAH04434.1|  464|Homo sapiens splicing factor 3a,
           subunit 2, 66kDa protein.
          Length = 464

 Score = 26.6 bits (56), Expect(2) = 4.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 565 PVRSPPPAAGAHPP 606
           P + PPPA G HPP
Sbjct: 277 PPQLPPPAPGVHPP 290



 Score = 22.6 bits (46), Expect(2) = 4.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 580 PPAAGAHPPLRSI 618
           PPA G HPP   +
Sbjct: 317 PPAPGVHPPTSGV 329


>AC005263-1|AAC25613.1|  464|Homo sapiens SP62_HUMAN protein.
          Length = 464

 Score = 26.6 bits (56), Expect(2) = 4.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 565 PVRSPPPAAGAHPP 606
           P + PPPA G HPP
Sbjct: 277 PPQLPPPAPGVHPP 290



 Score = 22.6 bits (46), Expect(2) = 4.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 580 PPAAGAHPPLRSI 618
           PPA G HPP   +
Sbjct: 317 PPAPGVHPPTSGV 329


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,048,086
Number of Sequences: 237096
Number of extensions: 1424674
Number of successful extensions: 3207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3199
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)