Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C02
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine re...    28   6.4  
Z70034-7|CAA93856.1|  855|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 163 ACVCTL*DALRPLPGFHLISAYIHTYMNCIDIYLRARTTNR 285
           +C  +L  AL PLP F +I +Y +     +  +LR  T  +
Sbjct: 285 SCTISLYPALDPLPNFFIIKSYRNAITQYLTDFLRLLTCGK 325


>AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein55 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 387 YVVTCISFIYVYIIIQYRETTREGF 313
           Y V  I FIY Y++IQ    TR  F
Sbjct: 103 YAVLLIHFIYRYLVIQNSSLTRHNF 127


>Z70034-7|CAA93856.1|  855|Caenorhabditis elegans Hypothetical
           protein C18E9.7 protein.
          Length = 855

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 471 TSYTMQISKYSLNIIHYDTDPYQMRST*YVVT 376
           T Y  QIS  S+NI   D+DP Q R   Y++T
Sbjct: 485 TVYPGQISSNSININFGDSDPEQGRFDYYLLT 516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,560,195
Number of Sequences: 27780
Number of extensions: 232362
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)