Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_C01
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_5073| Best HMM Match : Rhomboid (HMM E-Value=3.3)                   29   1.5  
SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)           28   4.4  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)                 27   5.9  
SB_1808| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)                 27   7.7  
SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077)                 27   7.7  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -2

Query: 223 GTLQKHCGTSHSPD-----GGSISWTVGLSHDGSACCGQYNTECS 104
           GT +   G S+ P      GG + W V  + D  +C GQ NT CS
Sbjct: 32  GTNRLRNGNSYLPSHCNCPGGRVLWNVTKTEDSKSCIGQLNT-CS 75


>SB_5073| Best HMM Match : Rhomboid (HMM E-Value=3.3)
          Length = 188

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 237 GFERSVRCRSTAVRRTALMVGPSHGR*GCHMTALLVV 127
           GF +S RC++TA  + A +   S G  G  M  L+VV
Sbjct: 58  GFSQSRRCKTTASAKLACLQVDSRGSPGAMMAMLVVV 94


>SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)
          Length = 1154

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +1

Query: 46  WLR*SPSTVKEFL*ENARLVNTQCCTAHNKQSRHVTTLPSMRWTHHQGCA-TYRSASATY 222
           +L  + +T+     E  R +NT   T H  +  H   L S R T H     TYR  +   
Sbjct: 720 YLNTNRTTIHALKGETYRYLNTNRTTIHALKGEHYHYLNSNRKTIHASKGETYRYLNTNR 779

Query: 223 RTFETLKPE 249
            T   LK E
Sbjct: 780 TTIHALKGE 788



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 46  WLR*SPSTVKEFL*ENARLVNTQCCTAHNKQSRHVTTLPSMRWT-HHQGCATYRSASATY 222
           +L  + +T+     E  R +NT   T H  +  +   L S R T H     TYR  +A  
Sbjct: 522 YLNANRTTIHALKGETYRYLNTNRTTIHALKGEYYRYLNSNRTTIHALKGETYRYLNANR 581

Query: 223 RTFETLKPES 252
            T   LK E+
Sbjct: 582 TTIHALKGET 591


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 205 CGTSHSPDGGSISWTVGLSHD 143
           CGTSH   G  ISW   L  D
Sbjct: 230 CGTSHESTGNFISWLKSLPQD 250


>SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
          Length = 412

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 72  QGIPIRKCPA-GEHSVLYCPQQAEPSCDNPTVHEMDPPSGL 191
           QG P+R  P  G   +L  PQ+  P+   P      PPSGL
Sbjct: 162 QGGPLRMMPPPGMPPLLLRPQEFSPNIPPPRFGLTGPPSGL 202


>SB_1808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 237 GFERSVRCRSTAVRRTALMVGPSHGR*GCHM 145
           GF +S RC++TA  + A +   S G  GC +
Sbjct: 36  GFSQSRRCKTTASAKLACLQVDSRGSPGCKL 66


>SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)
          Length = 738

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 130 NKQSRHVTTLPSMRWTHHQGCATYRSASAT 219
           N   +H       RWT H+G A Y ++  T
Sbjct: 88  NAAHQHFQEAHQYRWTRHEGAAGYENSGLT 117


>SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077)
          Length = 359

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 136 QSRHVTTLPSMRWTHHQGCATYRSASATYRTFETLKPESASNCQNVKY 279
           + R V     +R     GCA  R +    +   +LK  S SNC+ V Y
Sbjct: 42  EGRSVRASSLLRQLAKGGCAARRLSWMLVKQCSSLKTLSLSNCEKVTY 89


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
 Frame = +3

Query: 87   RKCPAGEHSVLYCPQQAEPSCDNPTVHEMDPPSGLCDVP----QCFCNVPNVRNLKTGKC 254
            R CP   ++ + C       C  P      PP  +C+VP    Q +C  P   N ++  C
Sbjct: 952  RDCP---NNFMCCDSGCYKQCVKPNQVFTMPPFSICEVPMRSGQIYCVCPECDNTESPVC 1008


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,114
Number of Sequences: 59808
Number of extensions: 260812
Number of successful extensions: 869
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)