Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B24
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    29   0.36 
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   1.5  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    26   4.5  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   4.5  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   7.8  
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|...    25   7.8  

>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 75  KVKQSVRFWNALR--WTE*ARLYLPKDSSI 158
           KVK+  R +NA+R  W E  R  +PKD SI
Sbjct: 27  KVKRRKRLFNAIRKLWNERRRYRMPKDESI 56


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 291 TTDFILQEKPSAYAPEATLIQYYSYNKKIYEY 196
           TTDFI   K  + +PEA     YSY+  +  Y
Sbjct: 250 TTDFIPYSKDLSTSPEAHRTSIYSYSANLPNY 281


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 279 ILQEKPSAYAPEATLIQYYSYNKKIYEYN 193
           IL  KP++Y  +  +  Y+S N  I+E N
Sbjct: 4   ILYPKPTSYLYQPFIKAYFSLNMAIFEIN 32


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 73  QKLSSQFASGTRCDGLNELDFIFQKILQFAE 165
           Q LSS + +  +   L ELDF  Q++  F E
Sbjct: 39  QALSSSYEAEEKAKQLKELDFRLQQLSSFCE 69


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 168 IHPELFAVHCIRKSSCYNCSIV*AWLQERTHS 263
           IH  +  + C   SS  NC  +   L +R HS
Sbjct: 360 IHQSIHEISCPHHSSSDNCLFILISLMDRLHS 391


>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 495 LDYSNNLYFYGKDKAPYVVTEDGVKKILGLPEN--PTYVR 382
           ++  +NLY Y   + P  V  +  K+I  LP N  PT ++
Sbjct: 26  VERQSNLYIYRNPELPLRVRLEAKKRIEALPTNAHPTKIK 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,574
Number of Sequences: 5004
Number of extensions: 46565
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)