Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B24
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    32   0.37 
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697...    28   6.0  
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773...    27   8.0  
08_01_0434 + 3809681-3810016,3810039-3811100                           27   8.0  
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344...    27   8.0  

>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +3

Query: 132  LYLPKDSSIR*VIHPE-LFAVHCIRK---SSCYNCSIV*AWLQERT 257
            LYL  DS I  +  PE +   HC+RK   ++C+N S++  WL E T
Sbjct: 1575 LYLTIDSCIDLITLPEPIKNCHCLRKLEITNCWNFSVLPEWLGELT 1620


>06_03_0287 - 19168685-19168735,19168847-19168884,19169517-19169727,
            19171461-19171643,19171879-19172028,19172161-19172256,
            19172378-19172464,19172535-19172741,19172823-19173047,
            19173150-19173261,19173397-19173453,19175522-19176882
          Length = 925

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -2

Query: 531  KLEDVKDAQEIVLDYSNNLYFYGKDKAPYVVTEDGVKKILGLPENPTYVRLIKPPFIVED 352
            +++D + A +  L Y N+  F G+DK   V   +   + LGL   P   +L+     + +
Sbjct: 835  EVKDKELAYQAWLGYYNSNKFIGRDKYQLVSLANEFSRSLGLNNPPAVPKLVLRKMGLNN 894

Query: 351  GAVYA 337
              VYA
Sbjct: 895  IPVYA 899


>12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,
            7731873-7732106,7732362-7732495,7734116-7734199,
            7735086-7735376,7735566-7735898,7736351-7736424,
            7736558-7736653,7736876-7737029,7737118-7737221,
            7737325-7737485,7737774-7738087,7738950-7739231,
            7739909-7740210,7740513-7740713,7740924-7741014,
            7741424-7741500,7741595-7741754,7742026-7742110,
            7742194-7742288
          Length = 1322

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 364  KWWLYQTYVSWILW*T*NLFNAVFGY 441
            KWW++  Y+S + W    LF   FG+
Sbjct: 1237 KWWIWLYYISPMSWTLNLLFTTQFGF 1262


>08_01_0434 + 3809681-3810016,3810039-3811100
          Length = 465

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 226 VLYERGFRSVRTRFLLKNKIGRLTCSVHVDDIDFVISRVYRSIFND 363
           VLY+ G  +VRT   L  ++  LT SV V D  +++    R + +D
Sbjct: 200 VLYDPGEHAVRTMPALPYQVRLLTTSVTVGDDLYILDTSRRHVNDD 245


>02_01_0478 -
           3442222-3442227,3442777-3442848,3442966-3443137,
           3443388-3443500,3443771-3443908,3444016-3444221,
           3444317-3444388,3444484-3444532,3444635-3444714,
           3444817-3445132,3445242-3445415,3445513-3446139,
           3446235-3446297,3446399-3446470,3446602-3446664,
           3446741-3446872,3447779-3447889,3449273-3449371,
           3450117-3450194
          Length = 880

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 128 STLSSKRFFNSLSNSPRTICST 193
           S +  KR F  L+NSP  IC+T
Sbjct: 748 SQIGMKRTFQDLTNSPNDICNT 769


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,475,350
Number of Sequences: 37544
Number of extensions: 259337
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)