Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B24
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024205-3|AAF36045.1|  308|Caenorhabditis elegans Hypothetical ...    34   0.063
Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U53149-2|AAM29664.1|  451|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    27   7.2  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    27   7.2  
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p...    27   9.5  
U70854-10|AAB09155.1|  296|Caenorhabditis elegans Hypothetical p...    27   9.5  

>AC024205-3|AAF36045.1|  308|Caenorhabditis elegans Hypothetical
           protein Y73C8B.2 protein.
          Length = 308

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 432 LRLQHKVLYLYHRSTGCSNNLKRFLARLSHPLIFIFVTTVRHFVNI 569
           L++  K++Y+ H S GC N L+  + R +H L+ I  T  RH   I
Sbjct: 110 LKIDGKIIYMGH-SRGCENALQTAVGREAHGLVLINPTGFRHHQGI 154


>Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical
           protein ZK596.3 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 91  FASGTRCDGLNELDFIFQKILQFAE*FTQNYLQYIVFVNLLVIT 222
           F   T CD +      F +++ F   FT  YLQY     + V+T
Sbjct: 256 FLVDTHCDSMALPSVAFSQLIYFLAFFTTGYLQYQCLAGIRVVT 299


>U53149-2|AAM29664.1|  451|Caenorhabditis elegans Hypothetical
           protein C24B5.2a protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -2

Query: 477 LYFYGKDKAPYVVTEDGVKKIL--GLPENPTYVRLIKPPFIVE-DGAVYAADDKVYII-Y 310
           L+   ++  P ++  D +  IL     ++    R +K  F+V+ DGA  +ADD++ +I  
Sbjct: 262 LFQIARNAQPSIIFIDEIDSILCERSEKDAEVSRRMKTEFLVQFDGATSSADDRILVIGA 321

Query: 309 VNGTSETTDFILQEKP 262
            N   E  D +L+  P
Sbjct: 322 TNRPHELDDAVLRRFP 337


>AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical
           protein R06A10.4 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +3

Query: 399 SLVNLESF*RRLRLQHKVLYLY------HRSTGCSNNLKRFLARLSHPLI 530
           ++V   SF + LR+QH+V   Y      +   G  NN    L+RLSHP +
Sbjct: 75  AVVGKGSFSQVLRVQHRVTRKYFAVKVVNGDCGAVNNELNILSRLSHPFV 124


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 193 IVFVNLLVITVVLYERGFRSVRT-RFLLKNKIGRLTCSVHVDDIDFVISRVYRSIFNDKW 369
           +VF N +VI  V  +R  RSV T +F+    +  L   + V  +      +Y  + ND W
Sbjct: 35  VVFGNTMVIFAVAVDRKLRSVTTNKFIASLAVSDLLVGLIVMPLS-----LYYKMHNDHW 89

Query: 370 WLYQTYVSWIL 402
            L  T+  + L
Sbjct: 90  TLGYTWCQFHL 100


>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = -2

Query: 456 KAPYVVTEDGVKKILGLPENPTYVRLIKPPFIVEDGAVYAADDKVYIIYVNGTSETTDFI 277
           +AP VV E     ++   E P  +   + P +VE+      ++    +       T D I
Sbjct: 285 EAPVVVAETEAPAVVET-EAPVVIEETEAPVVVEETPAPVVEETQAPVAAAKEESTYDDI 343

Query: 276 LQEKPSAYAPEAT 238
           ++E+PS     AT
Sbjct: 344 VEEQPSTATETAT 356


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform a protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = -2

Query: 456 KAPYVVTEDGVKKILGLPENPTYVRLIKPPFIVEDGAVYAADDKVYIIYVNGTSETTDFI 277
           +AP VV E     ++   E P  +   + P +VE+      ++    +       T D I
Sbjct: 225 EAPVVVAETEAPAVVET-EAPVVIEETEAPVVVEETPAPVVEETQAPVAAAKEESTYDDI 283

Query: 276 LQEKPSAYAPEAT 238
           ++E+PS     AT
Sbjct: 284 VEEQPSTATETAT 296


>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +3

Query: 165 VIHPEL----FAVHCIRKSSCYNCSIV 233
           + HP+L      VHC+R+S+CY+   V
Sbjct: 513 IYHPQLQIPKTEVHCVRRSACYDAQQV 539


>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +3

Query: 165 VIHPEL----FAVHCIRKSSCYNCSIV 233
           + HP+L      VHC+R+S+CY+   V
Sbjct: 513 IYHPQLQIPKTEVHCVRRSACYDAQQV 539


>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +3

Query: 165 VIHPEL----FAVHCIRKSSCYNCSIV 233
           + HP+L      VHC+R+S+CY+   V
Sbjct: 513 IYHPQLQIPKTEVHCVRRSACYDAQQV 539


>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +3

Query: 165 VIHPEL----FAVHCIRKSSCYNCSIV 233
           + HP+L      VHC+R+S+CY+   V
Sbjct: 513 IYHPQLQIPKTEVHCVRRSACYDAQQV 539


>U70854-10|AAB09155.1|  296|Caenorhabditis elegans Hypothetical
           protein F38A5.11 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 363 IVEDGAVYAADDKVYIIYVNGTSETTDFILQEKPSAYAPEATLIQYYSY 217
           I+E       D K Y I+   T+ +TDF   + P  Y   + + + + Y
Sbjct: 185 IIEGNQKIKVDPKQYNIFKKVTNNSTDFERFQPPKEYIVRSKIYELWPY 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,296,164
Number of Sequences: 27780
Number of extensions: 250561
Number of successful extensions: 683
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)