Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B23
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    27   4.6  
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924...    27   6.0  
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    27   8.0  
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    27   8.0  

>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 120 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPLSSGRRKA 1
           M T P       +A   A  GS  +T  PPSP   GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581


>01_02_0015 +
           10191793-10191957,10192085-10192229,10192331-10192419,
           10193009-10193063,10193607-10193692,10194006-10194065
          Length = 199

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 56  DPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDK 169
           D +  G  A  +     G   ++  ++D+FR LCTGDK
Sbjct: 71  DVEVGGEPAGRIVIGLFG--EVVPKTVDNFRALCTGDK 106


>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -2

Query: 101 SLFSRN*LCFRPCQDLRKKPR--SHLH 27
           SL++   LC R C DL K PR   +LH
Sbjct: 532 SLYNLQTLCLRNCYDLEKLPRRIKYLH 558


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 50  KKPRSHLHHYHQEGGR 3
           ++P+SH HH+H  G R
Sbjct: 164 QQPQSHHHHHHHSGSR 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,519
Number of Sequences: 37544
Number of extensions: 191030
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)