Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_B22
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical pr... 31 0.18
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 30 0.53
U55376-1|AAA98003.1| 434|Caenorhabditis elegans Hypothetical pr... 28 1.6
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 28 2.2
AF016425-6|AAY86242.1| 104|Caenorhabditis elegans Hypothetical ... 27 2.8
AC024856-1|ABB51172.1| 334|Caenorhabditis elegans Hypothetical ... 27 3.8
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 27 5.0
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 27 5.0
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 26 6.6
U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop hel... 26 6.6
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 26 6.6
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 26 6.6
>Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical
protein R11H6.2 protein.
Length = 442
Score = 31.5 bits (68), Expect = 0.18
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 204 TGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQE 55
TGG + DS T LP H +S L+ LI +++ + N + + D E
Sbjct: 301 TGGVTKDDSFVTPLPVHSLISLLIWLICLVYASIRNSSNTSLGKITGDNE 350
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 29.9 bits (64), Expect = 0.53
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 150 RVSPLLRLILILFDVVTRLFNKHVTAVDADQE 55
R+S L++ILFD++T F KH+ + D++
Sbjct: 416 RMSSNQNLMVILFDIITSPFRKHLDSEQEDED 447
>U55376-1|AAA98003.1| 434|Caenorhabditis elegans Hypothetical
protein F16H11.3 protein.
Length = 434
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 263 EPRALSLWFSLPVMGTLTIAPEVPSELI 180
+P + W+S MG+LTIA ++P+ I
Sbjct: 57 KPDGVETWYSKEFMGSLTIASQLPNASI 84
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical protein
B0416.1 protein.
Length = 1203
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 249 ELVVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILIL 115
+ V + S +DHSTG DSEST P++S R ++ +
Sbjct: 876 QFVPSLGSVSEVDHSTGEEQSSDSESTTSSLPPKLSLRQRFLVCI 920
>AF016425-6|AAY86242.1| 104|Caenorhabditis elegans Hypothetical
protein F59A7.11 protein.
Length = 104
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 43 LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTS 201
L++ LL + V+ PG + ED + R RR G T+ +DG++
Sbjct: 4 LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56
>AC024856-1|ABB51172.1| 334|Caenorhabditis elegans Hypothetical
protein Y71G10AR.4 protein.
Length = 334
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = -2
Query: 284 IWLVRSTEPRALSLWFSLPVMGTLTIA 204
+W+VRS E R L+++F + V+ +++A
Sbjct: 169 VWVVRSKESRRLTVYFVISVVVLISMA 195
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 139 WANSRVRRQAGALTINSDGTS-GAMVKVPITGNENHKLSALGSVDLTNQMKLGAVTA 306
WA R A +++ S+ T GAM++ + + + A+G ++ +M +TA
Sbjct: 1625 WAVDNWERMADYVSVISENTQDGAMLRAVVAVHNDENTKAMGLIEKVREMIDSELTA 1681
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 139 WANSRVRRQAGALTINSDGTS-GAMVKVPITGNENHKLSALGSVDLTNQMKLGAVTA 306
WA R A +++ S+ T GAM++ + + + A+G ++ +M +TA
Sbjct: 1625 WAVDNWERMADYVSVISENTQDGAMLRAVVAVHNDENTKAMGLIEKVREMIDSELTA 1681
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 243 VVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDA 64
+V IAS G + +T I ++ + P + +I D+ LFN H T D
Sbjct: 1407 LVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVDIPKVLFNVHATDADQ 1466
Query: 63 DQEN 52
D+++
Sbjct: 1467 DEKS 1470
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 243 VVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDA 64
+V IAS G + +T I ++ + P + +I D+ LFN H T D
Sbjct: 1407 LVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVDIPKVLFNVHATDADQ 1466
Query: 63 DQEN 52
D+++
Sbjct: 1467 DEKS 1470
>U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop helix
protein 14 protein.
Length = 246
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 80 TCLLKSLVTTSNSMRISRSSGLTRGCAGKRVLSLSTLMVPPVLWSR 217
+C + + T+S S + + R + +STL+VPP+ SR
Sbjct: 15 SCKIFQICTSSQSFDLELFNSSLYNLVPIRFVPISTLLVPPIRLSR 60
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 243 VVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDA 64
+V IAS G + +T I ++ + P + +I D+ LFN H T D
Sbjct: 1407 LVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVDIPKVLFNVHATDADQ 1466
Query: 63 DQEN 52
D+++
Sbjct: 1467 DEKS 1470
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 243 VVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDA 64
+V IAS G + +T I ++ + P + +I D+ LFN H T D
Sbjct: 1407 LVLIASDGRHNATTNVYIHIEDVNDNAPQFEQQKYATTVIEEDVDIPKVLFNVHATDADQ 1466
Query: 63 DQEN 52
D+++
Sbjct: 1467 DEKS 1470
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,527,240
Number of Sequences: 27780
Number of extensions: 133587
Number of successful extensions: 354
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -