Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B21
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   6.0  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.9  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   7.9  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   7.9  

>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 176 ILKRYCHNTQNQNQNLFIQ---FSP*EGAYERLKHYHRFGKQPSREEPA 313
           +L+   H+T++ + NL I    +S  EG YE LK  H    +P  EEP+
Sbjct: 59  LLEETKHSTKD-DVNLVIPGSTWSHIEGVYEMLKSRHDRQNEPVIEEPS 106


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 463 LALLASGLVSPYSYQEWTHIIKTTICIVF 377
           L  + SG+ +  S+  WT+     +CIVF
Sbjct: 190 LGSVFSGIFAQLSWWPWTYWTTAIVCIVF 218


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 424 YQEWTHIIKTTICIVFYMTKNDMIYYIYKKK 332
           YQEW  + K  +     +TK    Y ++KKK
Sbjct: 648 YQEWEELSKQEVFEDSAVTKASTSYKVWKKK 678


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 76  INYLIYKSVARSCISP*PMWPLISSV 153
           INYLI KS+  S  +P   W L  SV
Sbjct: 180 INYLISKSLKNSIFNPLLTWTLDISV 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,254
Number of Sequences: 5004
Number of extensions: 32734
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)