Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B21
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827...    29   3.5  

>05_03_0085 -
           8271718-8272005,8272110-8272393,8273610-8274012,
           8274792-8274816,8275686-8276149
          Length = 487

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/76 (26%), Positives = 29/76 (38%)
 Frame = -3

Query: 559 LLRTSCDFISXXXXXTIGMTFNSRLPLFHHESLALLASGLVSPYSYQEWTHIIKTTICIV 380
           LL T     +      I + F  + PL       +LA   +SP  +    H  KTT+   
Sbjct: 235 LLTTDVPSAAVLYGDNIYLVFQVKFPLHIARQSVILAFSKISPNKFHLAEHDDKTTLSFD 294

Query: 379 FYMTKNDMIYYIYKKK 332
           F    +   YY Y+ K
Sbjct: 295 FSSGDSVSTYYPYQLK 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,131,267
Number of Sequences: 37544
Number of extensions: 184203
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)