Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B21
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    29   3.1  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    29   3.1  
AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf gro...    27   9.5  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 469 ESLALLASGLVSPYSYQEWTHIIKTTICIVFYMTKNDM 356
           E +A++   L++P + +    I++ T+C V  MTK D+
Sbjct: 506 EEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDV 543


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 469 ESLALLASGLVSPYSYQEWTHIIKTTICIVFYMTKNDM 356
           E +A++   L++P + +    I++ T+C V  MTK D+
Sbjct: 506 EEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDV 543


>AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf growth
           factor relatedprotein 1 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 491 TIERHTNCSCGYCGN 535
           T+E HT+CSC  CG+
Sbjct: 187 TMEEHTSCSCFDCGS 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,765,000
Number of Sequences: 27780
Number of extensions: 177028
Number of successful extensions: 366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)