Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_B19
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 26 3.1
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 26 4.1
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 25 5.5
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 7.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.5
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 25 9.5
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 9.5
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.5
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +3
Query: 87 RGENIDNGEEDIKKMFCSWCQRIKICSNIDTIKSEQCDFQKYKNIIIPPTCVLLDKQTSY 266
RGE + + ++ +F WC + S + IK+ +++ P +++D+
Sbjct: 101 RGEGDEQHPDGVEGVFAYWCNH--LYSQLAAIKTPSRPAFGEFDLLPPSFQIIIDESLGC 158
Query: 267 NIKPVPDDN 293
+K D+N
Sbjct: 159 KVKGFEDNN 167
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 423 HSPALYGLHQRPVWDLVNLKTVREF 349
HSP LY + P+W VN ++ +
Sbjct: 273 HSPILYDITAVPIWSKVNQGLIKMY 297
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 516 VVQKPARLEPKQLCRLRHKPIYDI*REAIGPHSPALYGLHQRPVWDLVN 370
V Q RL K C P+Y + ++ +G P L G H WD+V+
Sbjct: 288 VFQGSTRLTEKMSCE--KYPLYRVYQDKVGRFFPRLDGSH----WDIVD 330
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 21 CKQITWPSDKPFLHHWVNVGTPRGENIDNG 110
C+Q T P DKP ++ P EN D+G
Sbjct: 374 CRQSTNPCDKPEFCTGISSKCPVDENWDDG 403
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 294 WEPLIIIVNRKSGNNRSDEILSLF*GLLNPIQVVDVSRTM 413
W+ L+ + G+N+ D + F G N + V R +
Sbjct: 107 WQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKL 146
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 294 WEPLIIIVNRKSGNNRSDEILSLF*GLLNPIQVVDVSRTM 413
W+ L+ + G+N+ D + F G N + V R +
Sbjct: 107 WQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKL 146
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 294 WEPLIIIVNRKSGNNRSDEILSLF*GLLNPIQVVDVSRTM 413
W+ L+ + G+N+ D + F G N + V R +
Sbjct: 107 WQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKL 146
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 294 WEPLIIIVNRKSGNNRSDEILSLF*GLLNPIQVVDVSRTM 413
W+ L+ + G+N+ D + F G N + V R +
Sbjct: 107 WQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKL 146
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 294 WEPLIIIVNRKSGNNRSDEILSLF*GLLNPIQVVDVSRTM 413
W+ L+ + G+N+ D + F G N + V R +
Sbjct: 107 WQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKL 146
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 294 WEPLIIIVNRKSGNNRSDEILSLF*GLLNPIQVVDVSRTM 413
W+ L+ + G+N+ D + F G N + V R +
Sbjct: 107 WQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKL 146
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 229 GIIIFLYF*KSHCSDLIVSILEHILILWHHEQN 131
GI++F K+H +++IL H L W+ N
Sbjct: 310 GIVLFDTLVKNHTEPELIAILGHELGHWYMSHN 342
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 186 SEQCDFQKYKNIIIP 230
SE+ D+QKY+ II+P
Sbjct: 231 SEREDYQKYEEIIVP 245
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -1
Query: 493 RTQATVPSPPQTNIRHLEGSHRTTFSGIVRLTSTTCMGFSKPQNSER 353
+T + S Q N + EG+ + + L S+ C G Q+ E+
Sbjct: 67 KTSTPLSSIKQPNFQSFEGNESEKETSLQELQSSFCSGIENLQHVEK 113
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 294 WEPLIIIVNRKSGNNRSDEILSLF*GLLNPIQVVDVSRTM 413
W+ L+ + G+N+ D + F G N + V R +
Sbjct: 107 WQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKL 146
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 294 WEPLIIIVNRKSGNNRSDEILSLF*GLLNPIQVVDVSRTM 413
W+ L+ + G+N+ D + F G N + V R +
Sbjct: 107 WQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKL 146
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 294 WEPLIIIVNRKSGNNRSDEILSLF*GLLNPIQVVDVSRTM 413
W+ L+ + G+N+ D + F G N + V R +
Sbjct: 107 WQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKL 146
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 294 WEPLIIIVNRKSGNNRSDEILSLF*GLLNPIQVVDVSRTM 413
W+ L+ + G+N+ D + F G N + V R +
Sbjct: 107 WQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKL 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,489
Number of Sequences: 5004
Number of extensions: 58497
Number of successful extensions: 156
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -