Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B17
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   1.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    24   5.3  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    23   9.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   9.3  

>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 224 NITSVGRLDFKLLTKRHVFDKQVNI 150
           NIT    L+++LL + HV  K+++I
Sbjct: 235 NITDQRTLEYELLNRFHVISKRIDI 259


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 289  QVTN*ETN-DYATFVQSKYCSPSILHQW 209
            ++ N E N D +  V S+YC+ S LH++
Sbjct: 1238 ELINPEINQDDSPIVASRYCTTSFLHRF 1265


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 163 LSKTCLFVNNLKSNLPTDV 219
           L KTC+   N   N PTD+
Sbjct: 178 LEKTCVQYMNSVQNFPTDI 196


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 100 FLKVIFKNYY*GIRQKFIFTCLSKTCLFVNNLKSNL 207
           FL+ + +++   +RQ  I TCL K  + ++   + L
Sbjct: 880 FLRTLTEHFMIDLRQLDIVTCLKKALVTLDEFSAPL 915


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 769,015
Number of Sequences: 5004
Number of extensions: 11569
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)