Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B17
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142...    27   3.5  

>01_05_0309 - 20713774-20713818,20713838-20713915,20714044-20714222,
            20714296-20714556,20715222-20715393,20715501-20715662,
            20716435-20716863,20717729-20717785,20717872-20718842,
            20719098-20719182,20719269-20719637,20719756-20720001,
            20720090-20720362,20720663-20720827,20721328-20721556,
            20721727-20722168,20723152-20724138,20724352-20724517,
            20725070-20725728,20725820-20726186
          Length = 2113

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 293  HTSHQLRD**LCYLCTV-----KILQPFNITSVGRLDFKLLTKRHVFDKQVNINFCRI 135
            + S  LR+  LC  C++     K+LQ FN   V  L   +     VFDK+ ++    I
Sbjct: 1241 YLSRVLRNQSLCSRCSLPLTKDKVLQEFNSNHVNELSRDVKAALQVFDKKFSLQVADI 1298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,092,844
Number of Sequences: 37544
Number of extensions: 53750
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)