Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B16
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   2.0  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   3.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   6.2  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    24   6.2  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   6.2  

>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 59  YDRKTSWAVCLNLTLYDFIS 118
           +  KT+W + LNLTL +F S
Sbjct: 619 FPSKTTWVLFLNLTLLNFAS 638


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
            SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -1

Query: 156  INSLRSQFS----EYLRLIKSYNVRFRQTAHDVLRSYE 55
            IN+ R+ +S    EY R I SYNVR  Q   +  R  E
Sbjct: 906  INARRANYSTRLEEYQRQINSYNVRVAQIKSEHQRRCE 943


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 317  VTHNINDIGKYSFTNLINFRPR 252
            VT   N+IG Y   +LIN R R
Sbjct: 2237 VTTEANEIGSYQEPSLINIRGR 2258


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 110 FISRRYSENWLRNELMQI 163
           F +++  + W+RN+L+QI
Sbjct: 385 FTTKKERDEWIRNQLLQI 402


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query: 156  INSLRSQF---SEYLRLIKSYNVRFRQTAHDVLRSYE 55
            IN L+++    +  L L+K YN R++     VL  YE
Sbjct: 1311 INELKAEIGAKTASLNLMKEYNSRWKLRFQSVLNKYE 1347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,809
Number of Sequences: 5004
Number of extensions: 22845
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)