Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B16
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0526 + 18332915-18333605,18335044-18335242,18335914-18336751     29   1.1  
07_03_0509 - 18903315-18903443,18903547-18903904,18904012-189040...    28   2.5  
06_03_0534 + 21888591-21888657,21888705-21888732,21889872-218899...    27   3.4  
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404...    27   4.4  
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784     27   4.4  
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458     27   5.9  
06_03_0308 - 19435837-19436721,19437251-19437280                       26   7.7  

>09_04_0526 + 18332915-18333605,18335044-18335242,18335914-18336751
          Length = 575

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 11  DRSHFWIRQYFENYYSYDRKTS-WAVCLNLTLYDFISRRYSENWLRNELMQIIISEY 178
           D  HF  R+Y  N   Y+ +         L   DF+  RY E+  R E ++ +I+EY
Sbjct: 516 DHYHF-AREYPRNLQEYEMERQVMPGGTRLRYVDFLENRYEESVRRQEHLRRLIAEY 571


>07_03_0509 -
           18903315-18903443,18903547-18903904,18904012-18904068,
           18904151-18904237,18904337-18904875
          Length = 389

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 71  TSWAVCLNLTLYDFISRRYSENW 139
           T WA CL L  Y   S R++E W
Sbjct: 132 TFWASCLMLLAYVLRSERFAETW 154


>06_03_0534 +
           21888591-21888657,21888705-21888732,21889872-21889909,
           21890117-21890189,21890891-21890991,21891382-21891461,
           21891672-21891755
          Length = 156

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 89  LNLTLYDFISRRYSENWLRNELMQII 166
           LN      + R+Y++ W ++EL+QI+
Sbjct: 129 LNYRRISIVERQYTQRWFQSELIQIL 154


>11_04_0467 +
           18039458-18039638,18040136-18040227,18040336-18040452,
           18041228-18041313,18041385-18041643,18041761-18041957,
           18042181-18042213,18043371-18043862,18044236-18044299,
           18045478-18045618,18045726-18045803,18047077-18047166,
           18047260-18047352,18047430-18047489,18047567-18047635,
           18047737-18047823,18048337-18048379,18048517-18048587,
           18049050-18049143,18050335-18050447,18050909-18050998,
           18051075-18051155,18052211-18052291,18052369-18052464,
           18052543-18052599,18052693-18052737,18052807-18052872,
           18052961-18052999
          Length = 1004

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 35  QYFENYYSYDRKTSWAVCLNLTLYDFISRRYSENWLRNELMQIIISEYREISTR 196
           Q +   Y Y +KT    C  L + D I+   + N ++ E+ + +I    E  T+
Sbjct: 698 QPYAKLYIYRKKTESGCCTALLIMDSITNYRNLNNIQKEIFEYLIVVNAECETK 751


>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
          Length = 773

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 92  NLTLYDFI--SRRYSENWLRNELMQIII 169
           N TLYD I  S RYS  WL NE  ++I+
Sbjct: 114 NRTLYDDIWNSFRYSPYWLSNEDNKLIV 141


>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
          Length = 1217

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 259 LKLIKLVNEYLPISFILCVTMCAFF 333
           +K+++L  ++LPI   LC + C+ F
Sbjct: 422 MKVLRLSYQHLPIHLQLCFSFCSLF 446


>06_03_0308 - 19435837-19436721,19437251-19437280
          Length = 304

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 53  YSYDRKTSWAVCLNLTL-YDFISRRYSENWLRNELMQIIISEYREISTRC 199
           Y++ R  +W V   L    DF++ R+    + +E   +++ E  E   RC
Sbjct: 145 YAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRC 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,672,249
Number of Sequences: 37544
Number of extensions: 115520
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)