Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B15
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    31   0.10 
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    27   1.3  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.7  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   3.9  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   3.9  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   6.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   6.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   6.8  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    24   9.0  

>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 30.7 bits (66), Expect = 0.10
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 125 RSPFLFPKTVIYSVYKFKRSITHLFYVRINDVRKRHVYR 9
           R+P LFPK+ +  V K K+ I H + V ++   +R+  R
Sbjct: 11  RNPSLFPKSTLDKVQKTKKYIEHYYKVAVDHAVERNQRR 49


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 121 HRFYSLRLLFTVYINLKDQSLTCFM 47
           H F+SL++LFTV  N +   + CF+
Sbjct: 315 HFFHSLKVLFTVPSNRRSLFIGCFL 339


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 311 LVSKFGGFRILNQSQSNRKTLGSSTKEIPILF*RRHRITGTIY 439
           +++K GGF+IL +  S  K L        IL   +  + GT Y
Sbjct: 270 MINKMGGFKILKECSSEGKLLAECFAYFDILA-SQSNLNGTYY 311


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 103 LGNKNGDRKAEQNKM--KFISVWLLVTLGACAYAR 201
           L + + D K ++ K+  KFI+V L ++LGA A AR
Sbjct: 475 LDDSDDDNKVKEGKVSSKFIAVELDLSLGAFANAR 509


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 206 PYGSNLLILKSHHYRIR 256
           PY SNLL+L + HY ++
Sbjct: 148 PYISNLLVLLTKHYHVK 164


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = +2

Query: 230 LKSHHYRIRMPEPRLEFIQHSPTLVVKLVSKFGGFRILNQSQSNRKTLGSSTKEIPIL 403
           LK+ +      E  ++  QH  TL+++       FR+L+  Q  +  +    + +P L
Sbjct: 706 LKTQNANFHRLEQEIQLKQHELTLLIEQRETDSSFRLLSDYQQYKDDVKDLKQRLPEL 763


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 272 LEFIQHSPTLVVKLVSKF 325
           L+F Q  PTL+ KL+SK+
Sbjct: 50  LQFCQFQPTLLDKLLSKY 67


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 214 QQSVNTQITSLSDKD 258
           Q  +NTQ+ +LSDKD
Sbjct: 66  QMKINTQLETLSDKD 80


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 227 ILKSH-HYRIRMPEPRLEFIQHSPTLVVKLVSKFGGFRILNQSQSNRKTLGSSTKEIP 397
           +L+S+   RI   +   ++IQ  P L++ L S    + + +Q   +R  + S  +E+P
Sbjct: 85  VLRSYMRTRINKIDKYAQYIQSHPNLLLYLSSPERQYLLRHQQIVHRHYMDSFLREVP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,525
Number of Sequences: 5004
Number of extensions: 38290
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)