Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_B15
(442 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 60 1e-09
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 59 1e-09
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 49 1e-06
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 43 1e-04
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 36 0.014
04_04_1258 + 32165918-32166041,32167218-32167384,32167569-321677... 28 2.9
04_04_1256 + 32124826-32124946,32125388-32125554,32125731-321259... 28 2.9
04_04_0989 - 29948834-29948995,29949083-29949253,29949369-299496... 27 5.1
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 27 8.8
08_02_0662 + 19789406-19789546,19789646-19789779,19790272-197904... 27 8.8
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 27 8.8
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 59.7 bits (138), Expect = 1e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +1
Query: 310 AGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTS 420
+G+E+WRI+NF+PV V + GKFY GDSYIILKTT+
Sbjct: 37 SGLEVWRIENFKPVPVPTSSHGKFYMGDSYIILKTTA 73
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 316 VEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKT-TSDNR 429
+++WR+ + S D K Y GD YI T T D++
Sbjct: 409 LQVWRVNGDGKTLLSSSDQSKLYTGDCYIFQYTYTGDDK 447
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 59.3 bits (137), Expect = 1e-09
Identities = 23/36 (63%), Positives = 31/36 (86%)
Frame = +1
Query: 313 GVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTS 420
G+EIWRI+NF+PV + + +GKF+ GDSYIILKTT+
Sbjct: 51 GLEIWRIENFKPVPIPASSYGKFFMGDSYIILKTTA 86
Score = 33.1 bits (72), Expect = 0.10
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 316 VEIWRIQNFEPVAVQSKDFGKFYKGDSYI 402
+++WRI + + + + S D KFY GD YI
Sbjct: 405 LQVWRINDKDKILLPSADQSKFYTGDCYI 433
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +1
Query: 310 AGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTS 420
+G+EIWRI+ + V V + G+F+ GDSY+ILKTT+
Sbjct: 76 SGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTA 112
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 316 VEIWRIQNFEPVAVQSKDFGKFYKGDSYI 402
+++WR+ E + + KFY GD YI
Sbjct: 453 LQVWRVNGTEKTFLSFSEQCKFYSGDCYI 481
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +1
Query: 277 VHPAFANAGRQAGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKT 414
V AF G + G++IW I +A++ GKFY G++YIIL T
Sbjct: 4 VDDAFLGVGDKPGLDIWCIMGSNLIAIEKSLHGKFYTGNTYIILST 49
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 35.9 bits (79), Expect = 0.014
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 208 IRQQSVNTQITSLSDKDARTKARVHPAFANAGRQAGVEIWRIQNFEPVAVQSKDFGKFYK 387
++QQ V+ I S A V P G+ +E++ + A+ ++ GKFY
Sbjct: 369 LKQQGVD--IKGASKSSAPVDEEVPPLLEGDGK---LEVYCVNGSAKTALPKEELGKFYS 423
Query: 388 GDSYIILKT 414
GD YI+L T
Sbjct: 424 GDCYIVLYT 432
>04_04_1258 +
32165918-32166041,32167218-32167384,32167569-32167769,
32168472-32168631,32168729-32168942,32169160-32169307
Length = 337
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 100 VLGNKNGDRKAEQNKMKFISVWLLVTLGACAYARTAIRQQSVNTQITSLSDKDARTK 270
VL K + AE+N + I+V+ + TLGA A T SV+ ++ LS + + K
Sbjct: 171 VLMEKAACKLAEENNISLITVFPVFTLGA---APTPTAATSVSAMLSLLSSDETQLK 224
>04_04_1256 +
32124826-32124946,32125388-32125554,32125731-32125934,
32126063-32126222,32126379-32126592,32126707-32126854
Length = 337
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 100 VLGNKNGDRKAEQNKMKFISVWLLVTLGACAYARTAIRQQSVNTQITSLSDKDARTK 270
VL K + AE+N + I+V + TLGA A T + S+ T ++ LS +A+ K
Sbjct: 171 VLLEKAACKFAEENDISLITVLPVFTLGA---APTPLTTTSIPTTLSLLSGDEAQLK 224
>04_04_0989 -
29948834-29948995,29949083-29949253,29949369-29949639,
29950459-29950533,29950706-29950866
Length = 279
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -3
Query: 257 SLSDSDVI*VLTDCCRMAVRAYAHAPRVTNSHTLMNFILFCSA--LRSPFLFPKTVIYSV 84
SLS D I VL C H T+ +T+ + +CS F+ P T+ S+
Sbjct: 58 SLSYEDTISVLMRVCFDGSTGGGHLENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIFMSL 117
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = -2
Query: 429 PVIRCRL*NNIGISFVELPKVFRLDCDWFKILNPP 325
P+ C + +N +++ + + ++++ D FKI+ PP
Sbjct: 757 PIQSCEMTSNFALAWNSIMEEYQINFDAFKIVYPP 791
>08_02_0662 +
19789406-19789546,19789646-19789779,19790272-19790476,
19791233-19791367,19792117-19792746,19793180-19793356,
19795175-19795198
Length = 481
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 136 VLPCGHRF-YSLRLLFTVYINLKDQSLTCFMCE 41
+LPCGHRF YS + ++ + + TC +C+
Sbjct: 396 ILPCGHRFCYSCIQEWADSLSSRGKVSTCPLCK 428
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 304 RQAGVEIWRIQNFEPVAVQSKDFGKFYKGDSYIILKTTSDNRNHL 438
++ V +WR+ EP+ V SK FG +IL+ + RN L
Sbjct: 569 QRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLILEVCAAIRNLL 613
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,238,673
Number of Sequences: 37544
Number of extensions: 247297
Number of successful extensions: 566
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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