Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B14
         (188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   0.19 
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    24   2.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    24   3.0  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    23   4.0  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    23   7.0  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    23   7.0  

>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 111 SWIPCCFQKSSNRPSRLDKFKPMTT 185
           +W PC F KS  +PS+  +F P  T
Sbjct: 381 AWDPCVFGKSRLQPSKSMRFNPRFT 405


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 108 VSWIPCCFQKSSNRPSRLDKFK 173
           + W  C F K S+ P+ +DK +
Sbjct: 207 IQWYTCMFGKKSSVPAVVDKLR 228


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 85  QQIEQDKTEYNYQDWYAYYNPKSRSYSP 2
           Q +E+  TE+    WY  Y   S ++ P
Sbjct: 718 QFLEKTSTEFQIHLWYLLYQAYSSAHRP 745


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 108 VSWIPCCFQKSSN 146
           V W+ CCF+ SS+
Sbjct: 531 VKWMRCCFEPSSD 543


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 40  TNLDSYTLSYLARSVATFLTET 105
           TNLD +   +   S+ TFL ET
Sbjct: 357 TNLDIWKKKFSVNSLYTFLRET 378


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 1   EENTT*TWDYNRHTNLDSYTLSYLARSVATFLTETRC 111
           ++NT+ T+ +  H N+    LS  +  + +   E RC
Sbjct: 43  KDNTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRC 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,335
Number of Sequences: 5004
Number of extensions: 8825
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)