Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B14
         (188 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1051 + 27215113-27215658                                         27   1.6  
04_04_1016 - 30139691-30139951,30140066-30140134,30141267-301414...    26   3.7  
04_04_1009 - 30078988-30079248,30079363-30079431,30080564-300807...    26   3.7  
01_03_0147 - 13125065-13126679,13126802-13127664                       26   3.7  
12_01_0097 + 763211-763723                                             25   6.4  
03_06_0651 + 35297560-35297895,35298881-35298991,35299670-352997...    25   6.4  
09_03_0128 + 12584166-12585320                                         25   8.5  

>06_03_1051 + 27215113-27215658
          Length = 181

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 60  SVLSCSICCY-FSDGDKVSWIPCC 128
           SV  C+IC   F+DG++V  +P C
Sbjct: 107 SVAGCAICLSDFADGERVRLLPAC 130


>04_04_1016 -
           30139691-30139951,30140066-30140134,30141267-30141470,
           30141552-30141808,30141899-30141983,30142080-30142164,
           30142269-30142795
          Length = 495

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 90  FSDGDKVSWIPCCFQKSSNRPSRLDKFKPMTTY 188
           F +G  +SWIPC  + S + P     + P T +
Sbjct: 283 FDEGSTISWIPCGRKLSCSYPGIKFSYFPDTYF 315


>04_04_1009 -
           30078988-30079248,30079363-30079431,30080564-30080767,
           30080849-30081105,30081196-30081280,30081377-30081461,
           30081566-30082092
          Length = 495

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 90  FSDGDKVSWIPCCFQKSSNRPSRLDKFKPMTTY 188
           F +G  +SWIPC  + S + P     + P T +
Sbjct: 283 FDEGSTISWIPCGRKLSCSYPGIKFSYFPDTYF 315


>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 93  SDGDKVSWIPCCFQKSSNRPSR 158
           S G  +SW+ CC  K +  P+R
Sbjct: 108 SSGGFLSWVRCCVNKVTTLPAR 129


>12_01_0097 + 763211-763723
          Length = 170

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 72  CSICCY-FSDGDKVSWIPCC 128
           C+IC   F+DGDKV  +P C
Sbjct: 113 CAICLGDFADGDKVRVLPRC 132


>03_06_0651 +
           35297560-35297895,35298881-35298991,35299670-35299744,
           35300165-35300225,35300406-35300479,35300564-35300668,
           35301099-35301206,35301604-35301707,35302005-35302223,
           35302505-35302646,35302694-35302825,35302962-35303066
          Length = 523

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 46  LDSYTLSYLARSVATFLTETRCPGSLVAFRKVATDR 153
           +D++ L  LAR  A  L   R PG +  FR+ A+ R
Sbjct: 1   MDAHLL-LLARPRALALAAARAPGGVAGFRRPASAR 35


>09_03_0128 + 12584166-12585320
          Length = 384

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 72  CSIC-CYFSDGDKVSWIPCC 128
           C++C C F  GD++  +P C
Sbjct: 144 CAVCLCEFDGGDRLRLLPLC 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,833,969
Number of Sequences: 37544
Number of extensions: 51032
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)