Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B14
         (188 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92835-5|CAB07398.1|  168|Caenorhabditis elegans Hypothetical pr...    26   4.3  
AF067623-3|AAY86316.1|  187|Caenorhabditis elegans Hypothetical ...    26   4.3  
Z96047-5|CAB09415.1|  379|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    25   5.6  
AL033514-27|CAA22088.1|  363|Caenorhabditis elegans Hypothetical...    25   9.9  
AF016442-5|AAT92071.1|  155|Caenorhabditis elegans Hypothetical ...    25   9.9  

>Z92835-5|CAB07398.1|  168|Caenorhabditis elegans Hypothetical
          protein H19N07.3 protein.
          Length = 168

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 61 EYNYQDWYAYYNPKSR 14
          E+N++ WY Y+ PK++
Sbjct: 9  EHNFKKWYIYWIPKTK 24


>AF067623-3|AAY86316.1|  187|Caenorhabditis elegans Hypothetical
           protein T26C12.6 protein.
          Length = 187

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 79  IEQDKTEYNYQDWYAYYNPKSRSY 8
           + Q  T  N +DW  Y NP ++SY
Sbjct: 38  VNQKMTYENARDWCHYKNPVTQSY 61


>Z96047-5|CAB09415.1|  379|Caenorhabditis elegans Hypothetical
           protein DY3.6 protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 93  SDGDKVSWIPCCFQKSSNR 149
           SD +   WIP CF KS+++
Sbjct: 104 SDSNDKDWIPHCFVKSTSK 122


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 129 SNKGSRTPCLRQKSSNRSSK 70
           SNK S  P LR+KSS+  +K
Sbjct: 28  SNKASSAPSLRKKSSSNPNK 47


>AL033514-27|CAA22088.1|  363|Caenorhabditis elegans Hypothetical
          protein Y75B8A.28 protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 22 WDYNRHTNLDSYT 60
          W+YN H ++DS+T
Sbjct: 7  WNYNSHNHVDSWT 19


>AF016442-5|AAT92071.1|  155|Caenorhabditis elegans Hypothetical
           protein K12B6.9 protein.
          Length = 155

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 57  YSVLSC--SICCYFSDGDKVSWIPCCFQKSSNRPSRLDKFKP 176
           ++ L C  S C   S+GD++  + CC  ++ N   +L  F P
Sbjct: 103 FAGLECKGSGCAERSEGDEIYNVCCCNTETCNSNFKLSIFLP 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,831
Number of Sequences: 27780
Number of extensions: 46802
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)