Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_B13
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0343 + 14812316-14812586,14812749-14812825 31 0.28
11_01_0712 - 5844291-5844474,5844722-5844777,5844861-5844959,584... 30 0.87
06_03_0587 + 22555414-22557231 29 1.1
06_03_1259 - 28800954-28802468 29 1.5
04_04_1372 + 33008740-33009130,33009485-33011544 29 2.0
01_01_0796 + 6190931-6192745 29 2.0
08_01_0230 + 1837700-1837871,1838035-1838195,1838329-1838476,183... 28 3.5
07_03_0383 - 17476271-17479228,17480466-17480750 27 6.1
01_05_0560 - 23288078-23288370,23288448-23288733 27 6.1
06_03_1258 + 28796643-28798169 27 8.1
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 8.1
>06_02_0343 + 14812316-14812586,14812749-14812825
Length = 115
Score = 31.5 bits (68), Expect = 0.28
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 144 AGDEPLRLYKGNDISPAPTSGDHPILPSIIDDIKLDPNRRY 266
AG P + GN+ S +P LPSI +D++L+ R Y
Sbjct: 57 AGGTPASDWMGNERGKGVLSMANPFLPSISEDLQLEKRRSY 97
>11_01_0712 -
5844291-5844474,5844722-5844777,5844861-5844959,
5845056-5845137,5845626-5845760,5845844-5846011,
5846127-5846310,5848114-5848189
Length = 327
Score = 29.9 bits (64), Expect = 0.87
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 183 ISPAPTSGDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSLSRNYYTSFPIHL 341
I PA + LPS +D L+PNRR R+ S+R+K++ + F ++L
Sbjct: 36 IKPAARNVSKSALPSGLD--ALNPNRRTLRTASSNRDKKNKDKLDTEIFELYL 86
>06_03_0587 + 22555414-22557231
Length = 605
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2
Query: 268 VYLLLGSSFISSMIEGSIGWSPLVGAGEMSLPLYNLSGSSPAS 140
V+L + +S I G+IG LV E+ L NLSGS PAS
Sbjct: 541 VFLSFSHNRLSGQIPGTIG--NLVQLNELRLDENNLSGSIPAS 581
>06_03_1259 - 28800954-28802468
Length = 504
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 147 GDEPLRLYKGNDISPAPTSGDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSLSRNYYTS 326
GD+ RL+ + S T + P++ DDI+ D R R H R R+ R Y
Sbjct: 202 GDDHHRLWTSHAFSHPSTFDTLAVDPALRDDIRADLLRFAARREHYARVGRAWKRGYL-- 259
Query: 327 FPIHLPP 347
+H PP
Sbjct: 260 --LHGPP 264
>04_04_1372 + 33008740-33009130,33009485-33011544
Length = 816
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -2
Query: 268 VYLLLGSSFISSMIEGSIGWSPLVGAGEMSLPLYNLSGSSPAS 140
VYL LG++ ++ + G I W P + +SLP+ +SG PA+
Sbjct: 292 VYLNLGNNSLTGSL-GPI-WYPQMNLQAISLPMNRISGHLPAN 332
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 330 PIHLPPFYPRPIILPTDPERFPIYA 404
P+H PP P P+++P + FP+ A
Sbjct: 431 PVHAPP--PTPLLMPVGADHFPLEA 453
>08_01_0230 +
1837700-1837871,1838035-1838195,1838329-1838476,
1838802-1839002,1839301-1839416,1839463-1839501
Length = 278
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 320 YFFPYPFTSFLS*TNNITNGPRTFSYL 400
YF YPF+SF + + +GP +++L
Sbjct: 218 YFHDYPFSSFSAGQAKVVHGPDNYAWL 244
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 264 YTRSIHS-HREKRSLSRNYYTSFPIHLPPFYP-RPIILPTD 380
YT+S + HR RSL+R+ Y+S +P P +I+P +
Sbjct: 995 YTKSNSNFHRSARSLARSLYSSQSFVMPSITPSNDVIVPEE 1035
>01_05_0560 - 23288078-23288370,23288448-23288733
Length = 192
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 189 PAPTSGDHPILPSIIDDIKLDPNRRYTRS 275
P P H +L S DD+ DP+ RY S
Sbjct: 121 PRPLRAGHYVLSSPPDDVDHDPDHRYVFS 149
>06_03_1258 + 28796643-28798169
Length = 508
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +3
Query: 144 AGDEPLRLYKGNDISPAPTSGDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSLSRNYYT 323
A D+ L+K + S T I P++ DDI+ D R H R R+ R Y
Sbjct: 210 AMDDHQMLWKAHKFSHPSTFDSLAIDPALRDDIRADLLRFVRSREHYARAGRAWKRGYL- 268
Query: 324 SFPIHLPP 347
+H PP
Sbjct: 269 ---LHGPP 273
>03_05_0697 +
26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 217 IGWSPLVGAGEMSLPLYNLSG 155
I W+ V A EMS+ LYNL+G
Sbjct: 450 IMWTCTVSAPEMSVMLYNLNG 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,624,037
Number of Sequences: 37544
Number of extensions: 213249
Number of successful extensions: 545
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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