Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_B08
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 32 0.056
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 29 0.69
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 29 0.69
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 28 0.91
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 27 2.1
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 2.8
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 27 2.8
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 26 4.9
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.9
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc... 25 6.4
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 25 8.5
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 32.3 bits (70), Expect = 0.056
Identities = 29/116 (25%), Positives = 44/116 (37%)
Frame = -2
Query: 602 SGNEHSGSIYGAPFLAVCSIVTTTFVLGADTKSIAPPMPFTILPGIIQLARSPNRETCIA 423
SGNE S S V S+ TTT + + ++ P P + I Q + + T A
Sbjct: 151 SGNEASPSSRAPSITPVDSVNTTTSAIQVPSVTLTAPAPLGVDQKISQDQKPDSWLTYNA 210
Query: 422 PKIVKSM*PPRIMPKLSSDEKNDAPGNMVTVSFPALIRSASTSSSVGNGPSPSIPF 255
S P++ P + S K +P ++ S SS + PS F
Sbjct: 211 QFAQNS---PQLAPSIPSPMKLSPANQQAMPPYPQMLGPGSISSYTNSNLGPSAGF 263
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 28.7 bits (61), Expect = 0.69
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 187 GIGIPMLASNYIPQNVKVLLQSENGILGLGPFPTEEEVD---ADLINAGKE 330
G+G N + N + L+Q ++GI+ L FP E++ A +I GKE
Sbjct: 8 GLGAVTPLGNGVKTNWRNLIQGKSGIVSLKGFPEYEQIPSKVAGVIPRGKE 58
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 28.7 bits (61), Expect = 0.69
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 437 ETCIAPKIVKSM*PPRIMPKLSSDEKNDA-PGNMVTVSF--PALIRSASTSSSVGNGPSP 267
ET + K + S PP ++ SS EK+D+ G++ ++ P I S SV SP
Sbjct: 150 ETHTSSKFLSSTLPPSLIFDPSSSEKSDSISGSLFDTNYTCPVNINGLSKQKSVRELKSP 209
Query: 266 SIP 258
S P
Sbjct: 210 SRP 212
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 28.3 bits (60), Expect = 0.91
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Frame = +1
Query: 22 QYLCTE*LKVKSLEKRIERKTISKANTKEKKSDLTRERIIRRAA-LEFKHGMHANLGIGI 198
+Y+ E +++ + RK IS K ++ D ERI R + K L
Sbjct: 30 EYIAHESREIEKKRLQKVRKEISSVKEKIRRLD---ERIDSRLTKISVKENFRKQLSKFR 86
Query: 199 PMLASNYIPQN-VKVLLQSENGIL--GLGPFPTEEEVDADLINAGKET 333
L S +N +K L +E+ G+G F TEE +LI GK T
Sbjct: 87 DTLQSLQSDENDIKRRLNNEDSANAPGIGAFSTEELERQELIRTGKVT 134
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 58 LEKRIE-RKTISKANTKEKKSDLTRERIIRRAALEFKHGM-HANLGIGIPM 204
LEKR + + TK+KK RE+ + R EF H M H G+P+
Sbjct: 29 LEKRKDYAQRAQDYKTKQKKLKRLREKALERNPDEFYHEMTHKKTKNGVPL 79
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 61 EKRIERKTISKANTKEKKSDLTRERIIRRAALEFKH 168
E + R +I+ + + SDL +E ++R ALE +H
Sbjct: 39 ENFLNRPSITSESAHPRGSDLEQETELKRLALEHEH 74
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 231 ILWYVITSQHRYSNSKISMHSMFKFKCCSS 142
ILW ++ N+ + H+ FK CC S
Sbjct: 290 ILWSLLVWLPFTKNTALGRHAQFKLDCCKS 319
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 598 VMSILGVFMGLHFWLYAPSLQQLSFSELILNP 503
+ + V+ +H +L APSLQ + +++ LNP
Sbjct: 582 IQPVANVYQSVHSFL-APSLQSILLAQVKLNP 612
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 168 MFKFKCCSSNYPFSCQIRFLFLCICFTYCFSF 73
+F K SS PFS + +FL + FT SF
Sbjct: 421 VFWSKSSSSTVPFSSWLLLIFLYLLFTVPLSF 452
>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 184 LGIGIPMLASNYIPQNVKVLLQSENGI 264
+G+G+ L Y PQ ++++ ENG+
Sbjct: 119 MGVGVEYLLPIYSPQIKRIVVLKENGL 145
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 392 RIMPKLSSDEKNDAPGNMVTVSFPALIRSASTSSSVGNGP 273
R+MP + D N+ G + VS P ++ + S N P
Sbjct: 210 RLMPYMPPDTPNNLEGVLAIVSSPQYAQALRSFSQALNSP 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,790
Number of Sequences: 5004
Number of extensions: 53548
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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