Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B08
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         28   6.5  
06_03_0818 - 24963652-24964983                                         28   6.5  
02_05_0572 + 30082734-30082739,30083136-30083383,30083695-300838...    28   6.5  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 24/81 (29%), Positives = 34/81 (41%)
 Frame = -2

Query: 509  KSIAPPMPFTILPGIIQLARSPNRETCIAPKIVKSM*PPRIMPKLSSDEKNDAPGNMVTV 330
            KS  PP P    P  ++ +  P     + P  VKS  PP  +      EK+  P   V +
Sbjct: 1198 KSPPPPAPVISPPPPVK-SPPPPAPVILPPPPVKSPPPPAPVISPPPPEKSPPPAAPVIL 1256

Query: 329  SFPALIRSASTSSSVGNGPSP 267
            S PA ++S    + V   P P
Sbjct: 1257 SPPA-VKSLPPPAPVSLPPPP 1276


>06_03_0818 - 24963652-24964983
          Length = 443

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/93 (23%), Positives = 35/93 (37%)
 Frame = -2

Query: 524 LGADTKSIAPPMPFTILPGIIQLARSPNRETCIAPKIVKSM*PPRIMPKLSSDEKNDAPG 345
           LG D   +   +P  +     ++    NR  CI+P+ +     PRI    S +    AP 
Sbjct: 342 LGLDGNLLEGEVPPALAKMAGRVRLHGNRAVCISPEFLAGAPRPRIAGVPSCNATQAAPV 401

Query: 344 NMVTVSFPALIRSASTSSSVGNGPSPSIPFSDC 246
               V  P  + SA   ++    P P +    C
Sbjct: 402 TRRPVVMPVPLASAEKPAAA--APPPPMRIGSC 432


>02_05_0572 +
           30082734-30082739,30083136-30083383,30083695-30083888,
           30083994-30084136
          Length = 196

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 135 PFSCQIRFLFLCICFTYCFSFDSLLQ 58
           PF  + RF  L I  TYCF+F  +L+
Sbjct: 56  PFYPKARFRSLIILHTYCFNFREILR 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,444,229
Number of Sequences: 37544
Number of extensions: 347010
Number of successful extensions: 860
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)