Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B08
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      26   0.25 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.3  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 281 FQQKRKLMQILLMLGRKQLPYYQGHHSFHQMTVL 382
           F     LM +      + LP YQ HH  H   VL
Sbjct: 49  FSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQVL 82


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 113 FFSFVFALLIVFLSILFSK 57
           FF F+FA+L V   I+F++
Sbjct: 408 FFPFLFAVLNVTYWIMFAE 426


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -1

Query: 228 LWYVITSQHRYSNSKISMHSMFKFKCCSS 142
           LWY I     Y   +     +F F C +S
Sbjct: 281 LWYWIDRNSAYKIDQRIQKGLFLFACTNS 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,334
Number of Sequences: 438
Number of extensions: 4208
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)