Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B07
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   3.2  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   4.2  
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    25   7.3  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   7.3  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   9.6  
SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...    25   9.6  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 159 CDKINSIELDQ-WINHDFYVVRSVEFKS*AYPL 254
           CD    +E+ + ++N  FY   S++F+  AYPL
Sbjct: 643 CDFNYKLEIARAFLNEKFYFPHSLDFRGRAYPL 675


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 141 ENNGSYCDKINSIELDQWINHD-FYVVRSVEFKS*AYPLIYL 263
           +    Y D +N +++ QWI  D F  +  V      YP + L
Sbjct: 191 DGQAQYADVLNEVQISQWIKVDGFANLHQVVVVKGTYPSLLL 232


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 93  LMVE*TSETTKIHKNHNWSIVPQIFFLPK 7
           L +E T ET K+ +   W I   + + PK
Sbjct: 195 LYLENTKETEKLAEERGWDIRDGVIYFPK 223


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 395 QTNLKFILRKSNNIIFYFD*KNDFHHII 312
           Q NLK+ L    N +F+FD  N  H +I
Sbjct: 112 QNNLKYALSYVTNALFHFD--NSSHMVI 137


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 150 GSYCDKINSIELDQWIN 200
           G++  K+ SI LD+W N
Sbjct: 54  GTHVSKVKSISLDEWSN 70


>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 395 QTNLKFILRKSNNIIFYFD*KNDFHHIIFFLIFRSFF 285
           QTNL+ +    N  +F  D     +HI+ FL+  S F
Sbjct: 12  QTNLQQVA--DNQFVFQLDSAESLNHIVVFLLPNSPF 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,929
Number of Sequences: 5004
Number of extensions: 32692
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)