Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B07
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-9|CAB04362.1|  733|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AC006693-6|AAF60383.2|  511|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC006693-4|AAF60381.2|  511|Caenorhabditis elegans Hypothetical ...    27   6.7  

>Z81536-9|CAB04362.1|  733|Caenorhabditis elegans Hypothetical
           protein F40D4.12 protein.
          Length = 733

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 278 LIRFLKIY*RIGSRFKFNGSNYIKIMID 195
           L+R  K+Y RIGS FK   S  + + +D
Sbjct: 110 LMRLQKVYDRIGSMFKKINSKLVSLAVD 137


>AC006693-6|AAF60383.2|  511|Caenorhabditis elegans Hypothetical
           protein W02H5.3 protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 317 IIFFLIFRSFFCYLIRF 267
           I+FFLIF SFF +  RF
Sbjct: 49  IVFFLIFSSFFSFFERF 65


>AC006693-4|AAF60381.2|  511|Caenorhabditis elegans Hypothetical
           protein W02H5.4 protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 317 IIFFLIFRSFFCYLIRF 267
           I+FFLIF SFF +  RF
Sbjct: 49  IVFFLIFSSFFSFFERF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,317,675
Number of Sequences: 27780
Number of extensions: 175850
Number of successful extensions: 361
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)