Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_B06
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 65 8e-12
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 31 0.12
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 28 1.1
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 1.5
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 27 2.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.1
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 25 6.1
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 8.0
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 25 8.0
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c... 25 8.0
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 64.9 bits (151), Expect = 8e-12
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Frame = +1
Query: 226 PF-RQEFDESNEWSGKPIPGWLYRS--LCPGIVLLALHDRAPQLKISEDRVAVTGEKGYC 396
PF R+ F S + K +P +YR L P + HD + + I + T EKG+
Sbjct: 318 PFNRRGFRYSPCEAAKDLPNVMYREIELPPFTSRINWHDISTPVFIDHSALCATVEKGFR 377
Query: 397 MVRATHGVSRGCWYWESSIEEL--PEGAASRVGWGRRYANLQAPLGYDKFGYSWRSRKGT 570
M R+ ++ G WY+E IE+ +GA R+G RR A L AP+GYD + Y R G
Sbjct: 378 MARSNVFMTSGEWYFEIKIEKGGGDDGAHVRIGVSRREAPLDAPVGYDAYSYGLRDLGGQ 437
Query: 571 RFH 579
+ H
Sbjct: 438 KVH 440
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 31.1 bits (67), Expect = 0.12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 181 KDGYRYILAEPDPHAPFRQEFDESNEWSGKPIPGWLYRSLC 303
+D YRY E + A FR++F +SNE P PG +Y C
Sbjct: 650 RDDYRYS-PEIEFKAAFREKFLQSNEKVPFPRPGEIYEKRC 689
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 219 WVWLGQYIPIAVFIEGVLGGV 157
W W+ P F+EG++GGV
Sbjct: 1265 WKWMDALSPYKYFLEGMIGGV 1285
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 146 GSFRAPRSAVRPFLPTGAPVSVAPL 72
G FR R RPF P+G P V L
Sbjct: 9 GGFRGGRGGSRPFTPSGPPDQVIEL 33
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 2.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 259 WSGKPIPGWLYR 294
W GKPIP WL++
Sbjct: 378 WDGKPIPFWLWK 389
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 133 LPDRQSVPSCRQGHPFQSP 77
LPD + PS GHP SP
Sbjct: 824 LPDEMASPSSSIGHPLPSP 842
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 500 RRPHPTRDAAPSGSSSIDDSQYQHPRDTP 414
RRPHP+ D P G+S Q P P
Sbjct: 242 RRPHPS-DTIPPGASMARSDPSQVPESNP 269
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3
Query: 126 SGSSETTLTWLPH 164
SGSS+TT T++PH
Sbjct: 236 SGSSKTTATYIPH 248
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 140 NYPHMVTPPSTPSIKTAIGIYW 205
+YPH+ P +I IGI+W
Sbjct: 177 DYPHLFLNPILLAINCLIGIWW 198
>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 486 HAGRRPLGQLLDRRLPVPASTRHAVSGADH 397
HAG+ P R +P+ A+T + DH
Sbjct: 14 HAGQEPDAATSSRAVPIYATTSYVFRDCDH 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,725
Number of Sequences: 5004
Number of extensions: 52276
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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