Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B05
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...   145   2e-36
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...   144   3e-36
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    30   0.12 
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    29   0.20 
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   1.9  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   2.5  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   2.5  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    25   5.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    24   7.7  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    24   7.7  

>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score =  145 bits (352), Expect = 2e-36
 Identities = 71/125 (56%), Positives = 91/125 (72%)
 Frame = +1

Query: 25  DVDVEVPANPVLSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 204
           +V+VE  A   +S     V  AL+EVLK AL+H GL  G+ EA+KALD+RQA LCVL E+
Sbjct: 16  EVEVEAAAPETVS-----VEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCES 70

Query: 205 CDEAAYNKLVQALCNEHQIPLVKVDNN*KLGEWAGLCKID*DGEARKIVGCSCVVLKDFG 384
           CD+ AY KLV+ALC E + PL+KV +   LGEWAGLC +D DG ARK+VGCSCV + D+G
Sbjct: 71  CDQEAYVKLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYG 130

Query: 385 EETPA 399
           E++ A
Sbjct: 131 EDSAA 135


>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  144 bits (350), Expect = 3e-36
 Identities = 67/109 (61%), Positives = 84/109 (77%)
 Frame = +1

Query: 73  MDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYNKLVQALCNE 252
           + V  +L+EVLK AL+H GL  G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 30  LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89

Query: 253 HQIPLVKVDNN*KLGEWAGLCKID*DGEARKIVGCSCVVLKDFGEETPA 399
            Q PLVKV +   LGEWAGLC +D DG ARK+VGCSCV + D+GE++ A
Sbjct: 90  SQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVA 138


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 17/74 (22%), Positives = 34/74 (45%)
 Frame = +1

Query: 79  VNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYNKLVQALCNEHQ 258
           +N  + + +K A     ++ G+ E  KA+ K +  L +LA +         +  LC ++ 
Sbjct: 37  LNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNN 96

Query: 259 IPLVKVDNN*KLGE 300
           +P +   +   LGE
Sbjct: 97  VPYLYTVSKELLGE 110


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 136 HGLHEAAKALDKRQAVLCVLAENCDEAAYNKLVQALCNEHQIPLVKVDNN*KLG 297
           +GL+     ++ ++A L ++A + D       + ALC +  +P   V N  +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 34  VEVPANPVLSGGAMDVNTALQEVLKTALIHGGLVHGLH 147
           +E+   P LS  A D + +   VL   L+HGG +HG H
Sbjct: 445 LEIDLEPYLSETA-DKSESHVYVLHGVLVHGGDLHGGH 481


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 91  LQEVLKTALIHG--GLVHGLHEAAKALDKRQAVLCVLAENCDEAAYNKLVQALCNEHQIP 264
           ++++ +  +++G  GL   L E+A  L  +  VL  +         N+++ +L  EH IP
Sbjct: 244 IKQLPRVDILYGYQGLNPKLAESAVHLGAKGLVLAAMGATSWTDDGNEVISSLIREHNIP 303

Query: 265 LV 270
           +V
Sbjct: 304 VV 305


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 91  LQEVLKTALIHG--GLVHGLHEAAKALDKRQAVLCVLAENCDEAAYNKLVQALCNEHQIP 264
           ++++ +  +++G  GL   L E+A  L  +  VL  +         N+++ +L  EH IP
Sbjct: 244 IKQLPRVDILYGYQGLNPKLAESAVHLGAKGLVLAAMGATSWTDDGNEVISSLIREHNIP 303

Query: 265 LV 270
           +V
Sbjct: 304 VV 305


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 393 RLLTEILENYARATDDFPSLAVLVD 319
           R+L   L NYA+  DD  SL+  +D
Sbjct: 84  RILAFALLNYAKNIDDLTSLSAFMD 108


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 115 LIHGGLVHGLHEAAKALDKRQAVLCVLAEN-CDE 213
           L+H GL+H L  + K          +LA N CDE
Sbjct: 896 LLHSGLIHNLLLSLKKFGSSSLRTFLLAMNTCDE 929


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 266 LLRSITIRSSANGPVSVKSTKTARLGKSSV 355
           L+R++  ++SANG V V        GKSS+
Sbjct: 132 LIRTLVDQASANGRVYVYFVGMPNTGKSSI 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,791
Number of Sequences: 5004
Number of extensions: 29212
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)